|
| Status |
Public on Sep 19, 2012 |
| Title |
100 |
| Sample type |
RNA |
| |
|
| Source name |
Biopsy
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: diffuse large b-cell lymphoma (DLBCL)
predicted class: GCB
class confidence: 0.921
age: 73.55
Sex: male
treated status: 1
follow-up status: Dead
follow-up years: 3.843942
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted from 5mm paraffin sections using the Ambion RecoverAll kit standard protocol, with the exception of a 16-hour protease digestion. These were routinely collected tissue samples and no attempt was made to standardise fixation or processing protocols
|
| Label |
Biotin
|
| Label protocol |
Standard Illumina protocol
|
| |
|
| Hybridization protocol |
Standard Illumina protocol
|
| Scan protocol |
Arrays were scanned on a BeadArray reader
|
| Data processing |
Data were quantile normalised using Lumi for R.
|
| |
|
| Submission date |
Oct 12, 2011 |
| Last update date |
Sep 19, 2012 |
| Contact name |
Matthew Anthony Care |
| E-mail(s) |
matthew.care@york.ac.uk
|
| Organization name |
The University of York
|
| Department |
Department of Biology
|
| Lab |
Bioscience Technology Facility, Data Science Hub
|
| Street address |
Wentworth Way
|
| City |
York |
| State/province |
North Yorkshire |
| ZIP/Postal code |
YO10 5DD |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL8432 |
| Series (1) |
| GSE32918 |
Whole genome expression profiling based on paraffin embedded tissue can be used to classify diffuse large b-cell lymphoma and predict clinical outcome |
|
