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GEO help: Mouse over screen elements for information. |
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Status |
Public on Sep 29, 2011 |
Title |
HudsonAlpha_ChipSeq_K562_ZBTB33_PCR1x |
Sample type |
SRA |
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Source name |
K562
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Organism |
Homo sapiens |
Characteristics |
datatype: ChipSeq datatype description: Chromatin IP Sequencing antibody antibodydescription: Kaiso (6F8) Mouse monoclonal IgG1. Raised against amino acids 1-504 representing full length Kaiso of human origin. Recommended for detection of Kaiso of m, r, h, canine and chicken origin by WB, IP, IF and ELISA. Antibody Target: ZBTB33 antibody targetdescription: KAISO is a transcriptional regulator that binds, via its zinc fingers, to DNA sequences containing methylated CGCG or to the consensus KAISO-binding site (KBS) TCCTGCNA antibody vendorname: Santa Cruz Biotechnology antibody vendorid: sc-23871 protocol description: one 15-cycle round of PCR (Myers) controlid: SL2455 labexpid: SL1114,SL1320 replicate: 1,2 softwareversion: MACS antibody antibodydescription: Kaiso (6F8) Mouse monoclonal IgG1. Raised against amino acids 1-504 representing full length Kaiso of human origin. Recommended for detection of Kaiso of m, r, h, canine and chicken origin by WB, IP, IF and ELISA antibody targetdescription: KAISO is a transcriptional regulator that binds, via its zinc fingers, to DNA sequences containing methylated CGCG or to the consensus KAISO-binding site (KBS) TCCTGCNA antibody vendorname: Santa Cruz Biotech antibody vendorid: sc-23871 treatment: None treatment description: No special treatment or protocol applies protocol: PCR1x protocol description: 1-cycle of PCR (Myers) controlid: SL2455 labexpid: SL1114 replicate: 1 replicate description: tier 1
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Biomaterial provider |
ATCC
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Treatment protocol |
None
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Growth protocol |
K562_protocol.pdf
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Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
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Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer |
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Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
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Submission date |
Sep 28, 2011 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
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Organization name |
ENCODE DCC
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Street address |
300 Pasteur Dr
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City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
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Platform ID |
GPL9052 |
Series (2) |
GSE32465 |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB |
GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
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Relations |
SRA |
SRX100549 |
BioSample |
SAMN00738466 |
Named Annotation |
GSM803504_hg19_wgEncodeHaibTfbsK562Zbtb33Pcr1xRawRep1.bigWig |
Named Annotation |
GSM803504_hg19_wgEncodeHaibTfbsK562Zbtb33Pcr1xRawRep2.bigWig |
Supplementary file |
Size |
Download |
File type/resource |
GSM803504_hg19_wgEncodeHaibTfbsK562Zbtb33Pcr1xPkRep1.broadPeak.gz |
156.3 Kb |
(ftp)(http) |
BROADPEAK |
GSM803504_hg19_wgEncodeHaibTfbsK562Zbtb33Pcr1xPkRep2.broadPeak.gz |
182.8 Kb |
(ftp)(http) |
BROADPEAK |
GSM803504_hg19_wgEncodeHaibTfbsK562Zbtb33Pcr1xRawRep1.bigWig |
19.3 Mb |
(ftp)(http) |
BIGWIG |
GSM803504_hg19_wgEncodeHaibTfbsK562Zbtb33Pcr1xRawRep2.bigWig |
12.4 Mb |
(ftp)(http) |
BIGWIG |
SRA Run Selector |
Raw data are available in SRA |
Processed data provided as supplementary file |
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