GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Sample GSM803485 Query DataSets for GSM803485
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_GM12878_Pol2-4H8_PCR1x
Sample type SRA
Source name GM12878
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
antibody antibodydescription: Mouse monoclonal to RNA polymerase II CTD repeat YSPTSPS antibody (4H8) - ChIP Grade. Antibody Target: POL2
antibody targetdescription: This gene encodes the largest subunit of RNA polymerase II, the polymerase responsible for synthesizing messenger RNA in eukaryotes
antibody vendorname: abcam
antibody vendorid: ab5408
protocol description: one 15-cycle round of PCR (Myers)
controlid: SL516,SL517
labexpid: SL748,SL847
labversion: SL748,SL847
replicate: 1,2
softwareversion: MACS
antibody vendorname: Abcam
antibody vendorid: ab5408
treatment: None
treatment description: No special treatment or protocol applies
protocol: PCR1x
protocol description: 1-cycle of PCR (Myers)
controlid: SL517
labexpid: SL748
replicate: 1
replicate description: tier 1
Biomaterial provider Coriell;
Treatment protocol None
Growth protocol GM12878_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX100530
BioSample SAMN00738447
Named Annotation GSM803485_hg19_wgEncodeHaibTfbsGm12878Pol24h8Pcr1xRawRep1.bigWig
Named Annotation GSM803485_hg19_wgEncodeHaibTfbsGm12878Pol24h8Pcr1xRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803485_hg19_wgEncodeHaibTfbsGm12878Pol24h8Pcr1xPkRep1.broadPeak.gz 788.6 Kb (ftp)(http) BROADPEAK
GSM803485_hg19_wgEncodeHaibTfbsGm12878Pol24h8Pcr1xPkRep2.broadPeak.gz 905.0 Kb (ftp)(http) BROADPEAK
GSM803485_hg19_wgEncodeHaibTfbsGm12878Pol24h8Pcr1xRawRep1.bigWig 84.2 Mb (ftp)(http) BIGWIG
GSM803485_hg19_wgEncodeHaibTfbsGm12878Pol24h8Pcr1xRawRep2.bigWig 556.7 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap