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Sample GSM803391 Query DataSets for GSM803391
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_GM12878_PAX5-C20_PCR1x
Sample type SRA
Source name GM12878
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
cell description: B-lymphocyte, lymphoblastoid, International HapMap Project - CEPH/Utah - European Caucasion, Epstein-Barr Virus
antibody antibodydescription: Goat polyclonal IgG, 200 micrograms/ml. Epitope mapping at the C-terminus of Pax-5 of human origin. Recommended for detection of Pax-5 of m, r and h origin by WB, IP, IF, IHC(P) and ELISA. Antibody Target: PAX5
antibody targetdescription: This gene encodes a member of the paired box (PAX) family of transcription factors. The central feature of this gene family is a novel, highly conserved DNA-binding motif, known as the paired box. PAX proteins are important regulators in early development, and alterations in the expression of their genes are thought to contribute to neoplastic transformation.
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-1974
protocol description: one 15-cycle round of PCR (Myers)
controlid: SL678,SL517
labexpid: SL735,SL675
labversion: 5,6
replicate: 1,2
softwareversion: MACS
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-1974
treatment: None
treatment description: No special treatment or protocol applies
protocol: PCR1x
protocol description: 1-cycle of PCR (Myers)
controlid: SL678
labexpid: SL675
replicate: 1
replicate description: tier 1
Biomaterial provider Coriell;
Treatment protocol None
Growth protocol GM12878_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX100436
BioSample SAMN00738353
Named Annotation GSM803391_hg19_wgEncodeHaibTfbsGm12878Pax5c20Pcr1xRawRep1.bigWig
Named Annotation GSM803391_hg19_wgEncodeHaibTfbsGm12878Pax5c20Pcr1xRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803391_hg19_wgEncodeHaibTfbsGm12878Pax5c20Pcr1xPkRep1.broadPeak.gz 808.0 Kb (ftp)(http) BROADPEAK
GSM803391_hg19_wgEncodeHaibTfbsGm12878Pax5c20Pcr1xPkRep2.broadPeak.gz 435.2 Kb (ftp)(http) BROADPEAK
GSM803391_hg19_wgEncodeHaibTfbsGm12878Pax5c20Pcr1xRawRep1.bigWig 60.9 Mb (ftp)(http) BIGWIG
GSM803391_hg19_wgEncodeHaibTfbsGm12878Pax5c20Pcr1xRawRep2.bigWig 17.1 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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