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Sample GSM803384 Query DataSets for GSM803384
Status Public on Sep 29, 2011
Title HudsonAlpha_ChipSeq_K562_PU.1_PCR1x
Sample type SRA
Source name K562
Organism Homo sapiens
Characteristics datatype: ChipSeq
datatype description: Chromatin IP Sequencing
antibody antibodydescription: Rabbit Polyclonal IgG. Antibody Target: PU1
antibody targetdescription: PU.1 (H-135)
antibody vendorname: Santa Cruz Biotechnology
antibody vendorid: sc-22805
protocol description: one 15-cycle round of PCR (Myers)
controlid: SL518,SL519
labexpid: SL705,SL646
labversion: 4
replicate: 1,2
softwareversion: MACS
antibody targetdescription: PU.1 (H-135)
antibody vendorname: Santa Cruz Biotech
antibody vendorid: sc-22805
treatment: None
treatment description: No special treatment or protocol applies
protocol: PCR1x
protocol description: 1-cycle of PCR (Myers)
controlid: SL518
labexpid: SL646
replicate: 1
replicate description: tier 1
Biomaterial provider ATCC
Treatment protocol None
Growth protocol K562_protocol.pdf
Extracted molecule genomic DNA
Extraction protocol Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina Genome Analyzer
Data processing
Submission date Sep 28, 2011
Last update date May 15, 2019
Contact name ENCODE DCC
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
Platform ID GPL9052
Series (2)
GSE32465 Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB
GSE51334 DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions
SRA SRX100429
BioSample SAMN00738346
Named Annotation GSM803384_hg19_wgEncodeHaibTfbsK562Pu1Pcr1xRawRep1.bigWig
Named Annotation GSM803384_hg19_wgEncodeHaibTfbsK562Pu1Pcr1xRawRep2.bigWig

Supplementary file Size Download File type/resource
GSM803384_hg19_wgEncodeHaibTfbsK562Pu1Pcr1xPkRep1.broadPeak.gz 771.7 Kb (ftp)(http) BROADPEAK
GSM803384_hg19_wgEncodeHaibTfbsK562Pu1Pcr1xPkRep2.broadPeak.gz 361.0 Kb (ftp)(http) BROADPEAK
GSM803384_hg19_wgEncodeHaibTfbsK562Pu1Pcr1xRawRep1.bigWig 33.5 Mb (ftp)(http) BIGWIG
GSM803384_hg19_wgEncodeHaibTfbsK562Pu1Pcr1xRawRep2.bigWig 17.8 Mb (ftp)(http) BIGWIG
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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