|
Status |
Public on Sep 29, 2011 |
Title |
HudsonAlpha_ChipSeq_K562_SIX5_PCR1x |
Sample type |
SRA |
|
|
Source name |
K562
|
Organism |
Homo sapiens |
Characteristics |
datatype: ChipSeq datatype description: Chromatin IP Sequencing antibody antibodydescription: Six5 (K-20) Goat polyclonal IgG, 200?g/ml. Epitope mapping near the C-terminus of Six5 of human origin. Recommended for detection of Six5 of human origin by WB, IF and ELISA. Antibody Target: SIX5 antibody targetdescription: The protein encoded by this gene is a homeodomain-containing transcription factor that appears to function in the regulation of organogenesis. This gene is located downstream of the dystrophia myotonica-protein kinase gene. Mutations in this geneare a cause of branchiootorenal syndrome type 2. antibody vendorname: Santa Cruz Biotechnology antibody vendorid: sc-55706 protocol description: one 15-cycle round of PCR (Myers) controlid: SL518,SL519 labexpid: SL842,SL986 labversion: 3,4 replicate: 1,2 softwareversion: MACS antibody targetdescription: The protein encoded by this gene is a homeodomain-containing transcription factor that appears to function in the regulation of organogenesis. This gene is located downstream of the dystrophia myotonica-protein kinase gene. Mutations in this geneare a cause of branchiootorenal syndrome type 2. antibody vendorname: Santa Cruz Biotech antibody vendorid: sc-55706 treatment: None treatment description: No special treatment or protocol applies protocol: PCR1x protocol description: 1-cycle of PCR (Myers) controlid: SL518 labexpid: SL842 replicate: 1 replicate description: tier 1
|
Biomaterial provider |
ATCC
|
Treatment protocol |
None
|
Growth protocol |
K562_protocol.pdf
|
Extracted molecule |
genomic DNA |
Extraction protocol |
Instrument model unknown. ("Illumina Genome Analyzer" specified by default). For more information, see http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
|
|
|
Library strategy |
ChIP-Seq |
Library source |
genomic |
Library selection |
ChIP |
Instrument model |
Illumina Genome Analyzer |
|
|
Data processing |
http://genome.ucsc.edu/cgi-bin/hgTrackUi?db=hg19&g=wgEncodeHaibTfbs
|
|
|
Submission date |
Sep 28, 2011 |
Last update date |
May 15, 2019 |
Contact name |
ENCODE DCC |
E-mail(s) |
encode-help@lists.stanford.edu
|
Organization name |
ENCODE DCC
|
Street address |
300 Pasteur Dr
|
City |
Stanford |
State/province |
CA |
ZIP/Postal code |
94305-5120 |
Country |
USA |
|
|
Platform ID |
GPL9052 |
Series (2) |
GSE32465 |
Transcription Factor Binding Sites by ChIP-seq from ENCODE/HAIB |
GSE51334 |
DNA replication-timing boundaries separate stable chromosome domains with cell-type-specific functions |
|
Relations |
SRA |
SRX100428 |
BioSample |
SAMN00738345 |
Named Annotation |
GSM803383_hg19_wgEncodeHaibTfbsK562Six5Pcr1xRawRep1.bigWig |
Named Annotation |
GSM803383_hg19_wgEncodeHaibTfbsK562Six5Pcr1xRawRep2.bigWig |