|
| Status |
Public on Jun 03, 2024 |
| Title |
HPV8 CD34+.Mouse.RNA.Seq.Sample.2 |
| Sample type |
SRA |
| |
|
| Source name |
skin tissue
|
| Organism |
Mus musculus |
| Characteristics |
tissue: skin tissue
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
total RNA was extracted using Rneasy micro kit (QIAGEN).
libraries were generated using Illumina TruSeq RNA Library Prep Kit (v2) and were subsequently sequenced on a Illumina HiSeq 4000
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 4000 |
| |
|
| Description |
CDHPV-9
|
| Data processing |
Trimmed and quality-checked reads were aligned to the GRCm38 mouse reference genome using STAR
normalised reads were generated using featureCounts (v1.5.0)
differentially expressed genes were then generated using the standard DESeq2 pipeline
Assembly: GRCm38/mm10
Supplementary files format and content: .txt data file normalised reads for each sample.
|
| |
|
| Submission date |
Nov 13, 2023 |
| Last update date |
Jun 03, 2024 |
| Contact name |
Girish K Patel |
| E-mail(s) |
patelgk@cardiff.ac.uk
|
| Organization name |
Cardiff University
|
| Street address |
Maindy Road
|
| City |
Cardiff |
| ZIP/Postal code |
CF244HQ |
| Country |
United Kingdom |
| |
|
| Platform ID |
GPL21103 |
| Series (2) |
| GSE247569 |
The impact of HPV8 on Lrig1+ and CD34+ hair follicle keratinocyte stem cell populations |
| GSE248056 |
The impact of HPV8 on hair follicle stem cell populations |
|
| Relations |
| BioSample |
SAMN38165124 |
| SRA |
SRX22426358 |
