|
Status |
Public on Sep 20, 2024 |
Title |
MVIR1-HS474-D7ETA1-MNGS1 |
Sample type |
SRA |
|
|
Source name |
tracheal aspirate
|
Organism |
Homo sapiens |
Characteristics |
gender: Female age: 48.8 race: Asian ethnicity: Not Hispanic 2bp_status: 2BP
|
Treatment protocol |
DNAse
|
Growth protocol |
Clinical tracheal aspirate specimens
|
Extracted molecule |
total RNA |
Extraction protocol |
Zymo DNA/RNA magbead NEBnext with Qiagen Fastselect rRNA depletion Random hexamer RNAseq
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina NovaSeq 6000 |
|
|
Data processing |
Alignment against human genome- kallisto Differential expression with R package Limma Assembly: HG-38, ENSEMBL v. 99 Supplementary files format and content: .csv file with genecounts
|
|
|
Submission date |
Nov 01, 2023 |
Last update date |
Sep 20, 2024 |
Contact name |
Charles Langelier |
E-mail(s) |
chaz.langelier@ucsf.edu
|
Organization name |
University of California San Francisco
|
Department |
Medicine
|
Lab |
Langelier Lab
|
Street address |
HSE 401, 513 Parnassus Ave
|
City |
San Francisco |
State/province |
CA |
ZIP/Postal code |
94143-0654 |
Country |
USA |
|
|
Platform ID |
GPL24676 |
Series (1) |
GSE246795 |
Microbial Dynamics and Pulmonary Immune Responses in COVID-19 Secondary Bacterial Pneumonia |
|