|
| Status |
Public on Sep 20, 2024 |
| Title |
Microbial Dynamics and Pulmonary Immune Responses in COVID-19 Secondary Bacterial Pneumonia |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
Metatranscriptomic analysis identifies a state of pathogen dominance and suppressed pulmonary immune signaling in critically ill COVID-19 patients with secondary bacterial pneumonia.
|
| |
|
| Overall design |
Comparing host gene expression and microbiome differences in COVID-19 patients with secondary bacterial pneumonia vs those without.
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Submitter states that missing raw files are due to patient privacy concerns.
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| |
|
| Contributor(s) |
Langelier C |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Nov 01, 2023 |
| Last update date |
Sep 20, 2024 |
| Contact name |
Charles Langelier |
| E-mail(s) |
chaz.langelier@ucsf.edu
|
| Organization name |
University of California San Francisco
|
| Department |
Medicine
|
| Lab |
Langelier Lab
|
| Street address |
HSE 401, 513 Parnassus Ave
|
| City |
San Francisco |
| State/province |
CA |
| ZIP/Postal code |
94143-0654 |
| Country |
USA |
| |
|
| Platforms (1) |
| GPL24676 |
Illumina NovaSeq 6000 (Homo sapiens) |
|
| Samples (56)
|
|
| Relations |
| BioProject |
PRJNA1034622 |
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