|
| Status |
Public on May 31, 2023 |
| Title |
non-CIN rep4 |
| Sample type |
SRA |
| |
|
| Source name |
3rd instar larvae
|
| Organism |
Drosophila melanogaster |
| Characteristics |
tissue: 3rd instar larvae
genotype: Mad2[ey]/TM6
|
| Treatment protocol |
no treatment
|
| Growth protocol |
standard growth media
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNEasy Plus minipreps
Illumina rRNA depleted TrueSeq
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Description |
10-Cat-Tm6
|
| Data processing |
CLC Genomics Workbench 20 adaptor trimming
Reads below 15bp discarded
Mapped to Drosophila genome, default settings
Assembly: Drosophila genome BDGP6.22.98
Supplementary files format and content: Excel spreadsheet containing RPKM and differential expression
|
| |
|
| Submission date |
May 03, 2023 |
| Last update date |
May 31, 2023 |
| Contact name |
Stephen L Gregory |
| E-mail(s) |
stephen.gregory@flinders.edu.au
|
| Phone |
0466987583
|
| Organization name |
Flinders University
|
| Department |
Molecular Medicine
|
| Street address |
Sturt Road
|
| City |
Bedford Park |
| State/province |
South Australia |
| ZIP/Postal code |
5042 |
| Country |
Australia |
| |
|
| Platform ID |
GPL25244 |
| Series (1) |
| GSE231601 |
Chromosomal instability causes sensitivity to polyamines and one-carbon metabolism |
|
| Relations |
| BioSample |
SAMN34570955 |
| SRA |
SRX20210197 |
