|
|
GEO help: Mouse over screen elements for information. |
|
Status |
Public on Aug 29, 2024 |
Title |
EGFR_vIII_T2_KO_WWZA-B2 |
Sample type |
SRA |
|
|
Source name |
U87
|
Organism |
Homo sapiens |
Characteristics |
cell line: U87 cell type: EGFR+vIII TLR2 KO
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was extracted using Quick-RNA MiniPrep kit according to the manufacturer’s instructions (ZYMO Research). Library was constructed by Functional Genomics Laboratory at UC Berkeley.
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina HiSeq 4000 |
|
|
Data processing |
RNA STAR-Feature count-DESeq2 Assembly: hg38 Supplementary files format and content: txt files include DESeq2 file comparing mRNA expression of EGFR+EGFRvIII TLR2 KO cells to EGFR+EGFRvIII control cells.
|
|
|
Submission date |
Aug 30, 2022 |
Last update date |
Aug 29, 2024 |
Contact name |
Zhenyi An |
E-mail(s) |
anzhenyi@gmail.com
|
Organization name |
UCSF
|
Department |
Neurology
|
Lab |
Weiss
|
Street address |
1450 3rd St HD 220
|
City |
San Francisco |
ZIP/Postal code |
CA |
Country |
USA |
|
|
Platform ID |
GPL20301 |
Series (1) |
GSE212325 |
EGFR and EGFRvIII coopt host defense pathways, promoting progression in glioblastoma |
|
Relations |
BioSample |
SAMN30594401 |
SRA |
SRX17325151 |
Supplementary data files not provided |
SRA Run Selector |
Raw data are available in SRA |
Processed data are available on Series record |
|
|
|
|
|