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| Status |
Public on Aug 29, 2024 |
| Title |
EGFR_vIII_T2_KO_WWZA-B1 |
| Sample type |
SRA |
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| Source name |
U87
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| Organism |
Homo sapiens |
| Characteristics |
cell line: U87
cell type: EGFR+vIII TLR2 KO
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was extracted using Quick-RNA MiniPrep kit according to the manufacturer’s instructions (ZYMO Research).
Library was constructed by Functional Genomics Laboratory at UC Berkeley.
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 4000 |
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| Data processing |
RNA STAR-Feature count-DESeq2
Assembly: hg38
Supplementary files format and content: txt files include DESeq2 file comparing mRNA expression of EGFR+EGFRvIII TLR2 KO cells to EGFR+EGFRvIII control cells.
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| Submission date |
Aug 30, 2022 |
| Last update date |
Aug 29, 2024 |
| Contact name |
Zhenyi An |
| E-mail(s) |
anzhenyi@gmail.com
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| Organization name |
UCSF
|
| Department |
Neurology
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| Lab |
Weiss
|
| Street address |
1450 3rd St HD 220
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| City |
San Francisco |
| ZIP/Postal code |
CA |
| Country |
USA |
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| Platform ID |
GPL20301 |
| Series (1) |
| GSE212325 |
EGFR and EGFRvIII coopt host defense pathways, promoting progression in glioblastoma |
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| Relations |
| BioSample |
SAMN30594402 |
| SRA |
SRX17325150 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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