GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Sample GSM639883
Query DataSets for GSM639883
Status
Public on Dec 15, 2010
Title
Basal epidermal cells, Sample 2
Sample type
RNA
Source name
Human epidermis from brest reduction
Organism
Homo sapiens
Characteristics
cell type: Basal epidermal cells
donor: 2
Extracted molecule
total RNA
Extraction protocol
Standard Affymetrix protocol
Label
Biotin
Label protocol
Standard Affymetrix protocol
Hybridization protocol
Standard Affymetrix protocol
Scan protocol
Standard Affymetrix protocol
Data processing
MAS 5.0
Submission date
Dec 14, 2010
Last update date
Dec 15, 2010
Contact name
Miroslav Blumenberg
E-mail(s)
miroslav.blumenberg@nyumc.org
Phone
212 263-5924
Organization name
NYU School of Medicine
Department
Dermatology
Lab
Blumenberg
Street address
455 First Ave #874
City
New York
State/province
NY
ZIP/Postal code
10016
Country
USA
Platform ID
GPL571
Series (1)
GSE26059
Epidermal differentiation: basal vs. suprabasal keratinocytes
Data table header descriptions
ID_REF
VALUE
Signal
ABS_CALL
indicating whether the transcript was present (P), absent (A), or marginal (M)
DETECTION P-VALUE
Data table
ID_REF
VALUE
ABS_CALL
DETECTION P-VALUE
AFFX-BioB-5_at
252.836
P
0.000509415
AFFX-BioB-M_at
398.626
P
5.16732e-05
AFFX-BioB-3_at
225.085
P
0.000126798
AFFX-BioC-5_at
609.861
P
6.02111e-05
AFFX-BioC-3_at
541.807
P
4.42873e-05
AFFX-BioDn-5_at
695.594
P
4.42873e-05
AFFX-BioDn-3_at
3854.63
P
7.00668e-05
AFFX-CreX-5_at
7872.1
P
5.16732e-05
AFFX-CreX-3_at
7850.84
P
4.42873e-05
AFFX-DapX-5_at
19.4067
P
0.0309764
AFFX-DapX-M_at
12.5299
A
0.239063
AFFX-DapX-3_at
2.37717
A
0.876428
AFFX-LysX-5_at
1.83374
A
0.368438
AFFX-LysX-M_at
16.9525
A
0.470241
AFFX-LysX-3_at
1.71965
A
0.645547
AFFX-PheX-5_at
4.20272
A
0.60308
AFFX-PheX-M_at
1.59455
A
0.794268
AFFX-PheX-3_at
5.50049
A
0.724854
AFFX-ThrX-5_at
12.1113
A
0.645547
AFFX-ThrX-M_at
9.22325
A
0.485109
Total number of rows:
22277
Table truncated, full table size
666 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM639883_Alix_B4+_3_U133A2.0.CEL.gz
2.0 Mb
(ftp)
(http)
CEL
GSM639883_Alix_B4+_3_U133A2.0.CHP.gz
442.7 Kb
(ftp)
(http)
CHP
Processed data included within Sample table
Processed data provided as supplementary file
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
