|
Status |
Public on Dec 01, 2011 |
Title |
RSG_12h_rep5 |
Sample type |
RNA |
|
|
Source name |
THP-1
|
Organism |
Homo sapiens |
Characteristics |
cell line: THP-1 differentiation: PMA-differentiated THP-1 cells treatment: RSG (1microM) time (hrs): 12
|
Treatment protocol |
THP-1 cells were differentiated with PMA (10ng/ml) over the course of 40h. Cells were washed and incubated with medium w/o PMA for 2 hours prior to stimulation.
|
Growth protocol |
THP-1 cells (ATCC TIB-202) were maintained in RPMI-1640 medium supplemented with 10% FBS at 37C and 5% CO2.
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was extracted with QIAGEN RNeasy mini kit following the standard protocol provided with the extraction kit.
|
Label |
biotin
|
Label protocol |
Biotinylated cRNA were prepared with the Ambion totalRNA kit for Illumina
|
|
|
Hybridization protocol |
Standard Illumina hybridization protocol
|
Scan protocol |
Standard Illumina scanning protocol
|
Description |
replicate 5
|
Data processing |
The data were normalised using average normalisation with BeadsStudio 3.1.3.0 (Illumina)
|
|
|
Submission date |
Nov 04, 2010 |
Last update date |
Dec 01, 2011 |
Contact name |
Sebastian Pott |
E-mail(s) |
spott@uchicago.edu
|
Organization name |
University of Chicago
|
Department |
Human Genetics
|
Street address |
920 58th Street
|
City |
Chicago |
State/province |
Il |
ZIP/Postal code |
60637 |
Country |
USA |
|
|
Platform ID |
GPL6883 |
Series (2) |
GSE25137 |
Functional and cellular constraints that shaped the PPARg binding landscape in human and mouse macrophages: human expression |
GSE25608 |
Functional and cellular constraints that shaped the PPARg binding landscape in human and mouse macrophages |
|