|
| Status |
Public on May 22, 2022 |
| Title |
Aosa05jaw |
| Sample type |
SRA |
| |
|
| Source name |
jaw muscle
|
| Organism |
Anolis osa |
| Characteristics |
tissue: jaw muscle
Sex: male
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted from whole muscle using Trizol extractions
Libraries were constructed using BGI
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
BGISEQ-500 |
| |
|
| Data processing |
Adaptors trimmed, low quality ends removed and pair ends overlapped with HTStream
Sequences mapped to Anolis carolinensis using STAR
genes counted using STAR
Assembly: Anolis carolinensis genome
Supplementary files format and content: tab deliminated .txt file with raw read counts per loci
|
| |
|
| Submission date |
May 19, 2022 |
| Last update date |
May 22, 2022 |
| Contact name |
Andrea Lyn Liebl |
| E-mail(s) |
andrea.liebl@usd.edu
|
| Phone |
6056586711
|
| Organization name |
University of South Dakota
|
| Department |
Biology
|
| Street address |
414 E Clark Street
|
| City |
Vermillion |
| State/province |
SD |
| ZIP/Postal code |
57069 |
| Country |
USA |
| |
|
| Platform ID |
GPL32274 |
| Series (1) |
| GSE203413 |
Gene expression and muscle contractile physiology in anoles |
|
| Relations |
| BioSample |
SAMN28555510 |
| SRA |
SRX15388092 |
