|
| Status |
Public on Mar 03, 2022 |
| Title |
Sample110.Fibroblast.205035150153_R05C01 |
| Sample type |
genomic |
| |
|
| Source name |
Fibroblast
|
| Organism |
Homo sapiens |
| Characteristics |
age: 0
Sex: Male
cell type: Fibroblast
condition: Chronic Radiation
populationdoublinglevel: 2.9
passagenumber: 2
|
| Growth protocol |
DNA extracted from cells.
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Genomic DNA was extracted.
|
| Label |
Cy3,Cy5
|
| Label protocol |
Standard Illumina Protocol.
|
| |
|
| Hybridization protocol |
Bisulphite converted DNA was amplified, fragmented and hybridised to the Illumina Infinium HumanMethylation850 BeadChip using standard Illumina protocol.
|
| Scan protocol |
Arrays were imaged using BeadArray Reader using standard recommended Illumina scanner setting.
|
| Description |
205035150153_R05C01
genomic DNA methylation from tissue=Fibroblast species=Human
|
| Data processing |
Noob normalization as implemented in the minfi R package M. Aryee et al. 2014. PMID: 24478339
datBetaNormalized.csv: Comma-separated text file includes Noob normalized beta values.
|
| |
|
| Submission date |
Mar 01, 2022 |
| Last update date |
Mar 04, 2022 |
| Contact name |
Steve Horvath |
| E-mail(s) |
shorvath@altoslabs.com
|
| Organization name |
University of California, Los Angeles
|
| Department |
Human Genetics
|
| Lab |
Horvath
|
| Street address |
695 Charles E. Young Drive South, Box 708822
|
| City |
Los Angeles |
| State/province |
CA |
| ZIP/Postal code |
90095-7088 |
| Country |
USA |
| |
|
| Platform ID |
GPL23976 |
| Series (2) |
| GSE197723 |
In vitro methylation studies in multiple human cell types [HumanMethylation850 array] |
| GSE197724 |
In vitro methylation studies in multiple human cell types |
|
