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Sample GSM5909402 Query DataSets for GSM5909402
Status Public on Feb 22, 2022
Title S69_16X
Sample type RNA
 
Source name Peripheral blood_TDMT439_total RNA_myeloid-derived suppressor cell
Organism Homo sapiens
Characteristics tissue: Peripheral blood
pre_alveolar macrophageplification: 16X
patient condition: Tuberculosis
cell type: myeloid-derived suppressor cell
patient_id: TDMT439
Extracted molecule total RNA
Extraction protocol Pre-alveolar macrophageplification protocol: cDNA were further subjected to either 16 or 20 pre-alveolar macrophageplification cycles using Fluidigm One Tube Prealveolar macrophagep Master Mix (Fluidigm PN 100-5580)
RNEasy® Micro Kit (Qiagen, Germany)
Label N/A
Label protocol N/A
 
Hybridization protocol N/A
Scan protocol N/A
Description S69_16X
Data processing import into R and normalisation based on 3 reference genes using BioConductor packages readqPCR and normqPCR
statistical analysis using Stan via the brms package
 
Submission date Feb 21, 2022
Last update date Feb 22, 2022
Contact name Gian van der Spuy
Organization name Stellenbosch University
Department Biomedical Sciences
Street address Francie van Zijl Dr
City Parow
ZIP/Postal code 7530
Country South Africa
 
Platform ID GPL31965
Series (1)
GSE197113 Targeted gene expression profiling of human myeloid cells from blood and lung compartments of patients with Tuberculosis and other lung diseases

Data table header descriptions
ID_REF
VALUE normalized signal

Data table
ID_REF VALUE
ACTB 12.73071399
ARG1 12.15182501
CAV1 11.19298666
CD14 2.90910694
CD274 10.40343094
CD33 2.585361987
CD36 2.165199611
CPT1A 16.79982073
CSF2RA 24.27129647
FASLG 7.907679752
FUT4 5.239733769
G6PD 2.543814215
GAPDH -0.322664556
HADHA 1.047226652
HLA.DRA -0.879792264
HMGB1 18.95638862
IDO1 24.27129647
IFNG 5.67388669
IL10 9.404762026
IL17A 24.27129647

Total number of rows: 48

Table truncated, full table size <1 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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