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Sample GSM5909400 Query DataSets for GSM5909400
Status Public on Feb 22, 2022
Title S68_16X
Sample type RNA
 
Source name BAL Fluid_TBH70446489_total RNA_myeloid-derived suppressor cell
Organism Homo sapiens
Characteristics tissue: BAL Fluid
pre_alveolar macrophageplification: 16X
patient condition: Tuberculosis
cell type: myeloid-derived suppressor cell
patient_id: TBH70446489
Extracted molecule total RNA
Extraction protocol Pre-alveolar macrophageplification protocol: cDNA were further subjected to either 16 or 20 pre-alveolar macrophageplification cycles using Fluidigm One Tube Prealveolar macrophagep Master Mix (Fluidigm PN 100-5580)
RNEasy® Micro Kit (Qiagen, Germany)
Label N/A
Label protocol N/A
 
Hybridization protocol N/A
Scan protocol N/A
Description S68_16X
Data processing import into R and normalisation based on 3 reference genes using BioConductor packages readqPCR and normqPCR
statistical analysis using Stan via the brms package
 
Submission date Feb 21, 2022
Last update date Feb 22, 2022
Contact name Gian van der Spuy
Organization name Stellenbosch University
Department Biomedical Sciences
Street address Francie van Zijl Dr
City Parow
ZIP/Postal code 7530
Country South Africa
 
Platform ID GPL31965
Series (1)
GSE197113 Targeted gene expression profiling of human myeloid cells from blood and lung compartments of patients with Tuberculosis and other lung diseases

Data table header descriptions
ID_REF
VALUE normalized signal

Data table
ID_REF VALUE
ACTB 13.12444495
ARG1 7.858049982
CAV1 13.12444495
CD14 1.405982274
CD274 0.806297852
CD33 3.693358863
CD36 4.904043083
CPT1A 13.12444495
CSF2RA 13.12444495
FASLG 3.333297564
FUT4 -1.030985413
G6PD 2.033272268
GAPDH -0.145404913
HADHA 1.3548725
HLA.DRA -1.949979861
HMGB1 13.12444495
IDO1 13.12444495
IFNG 13.12444495
IL10 13.12444495
IL17A 13.12444495

Total number of rows: 48

Table truncated, full table size <1 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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