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Sample GSM5909396 Query DataSets for GSM5909396
Status Public on Feb 22, 2022
Title S66_16X
Sample type RNA
 
Source name BAL Fluid_TBH163527450_total RNA_myeloid-derived suppressor cell
Organism Homo sapiens
Characteristics tissue: BAL Fluid
pre_alveolar macrophageplification: 16X
patient condition: Tuberculosis
cell type: myeloid-derived suppressor cell
patient_id: TBH163527450
Extracted molecule total RNA
Extraction protocol Pre-alveolar macrophageplification protocol: cDNA were further subjected to either 16 or 20 pre-alveolar macrophageplification cycles using Fluidigm One Tube Prealveolar macrophagep Master Mix (Fluidigm PN 100-5580)
RNEasy® Micro Kit (Qiagen, Germany)
Label N/A
Label protocol N/A
 
Hybridization protocol N/A
Scan protocol N/A
Description S66_16X
Data processing import into R and normalisation based on 3 reference genes using BioConductor packages readqPCR and normqPCR
statistical analysis using Stan via the brms package
 
Submission date Feb 21, 2022
Last update date Feb 22, 2022
Contact name Gian van der Spuy
Organization name Stellenbosch University
Department Biomedical Sciences
Street address Francie van Zijl Dr
City Parow
ZIP/Postal code 7530
Country South Africa
 
Platform ID GPL31965
Series (1)
GSE197113 Targeted gene expression profiling of human myeloid cells from blood and lung compartments of patients with Tuberculosis and other lung diseases

Data table header descriptions
ID_REF
VALUE normalized signal

Data table
ID_REF VALUE
ACTB 14.83951031
ARG1 9.971733024
CAV1 14.83951031
CD14 3.386571701
CD274 14.83951031
CD33 -1.809276558
CD36 14.83951031
CPT1A 14.83951031
CSF2RA 14.83951031
FASLG 14.83951031
FUT4 -2.074837396
G6PD 4.182272449
GAPDH -0.843057617
HADHA -3.027934744
HLA.DRA 2.428307023
HMGB1 10.0656083
IDO1 14.83951031
IFNG 14.83951031
IL10 6.872215847
IL17A 7.175088747

Total number of rows: 48

Table truncated, full table size <1 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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