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Sample GSM5909388 Query DataSets for GSM5909388
Status Public on Feb 22, 2022
Title S62_16X
Sample type RNA
 
Source name Peripheral blood_TBHLeukaemiaTB_total RNA_myeloid-derived suppressor cell
Organism Homo sapiens
Characteristics tissue: Peripheral blood
pre_alveolar macrophageplification: 16X
patient condition: Other Lung Disease
cell type: myeloid-derived suppressor cell
patient_id: TBHLeukaemiaTB
Extracted molecule total RNA
Extraction protocol Pre-alveolar macrophageplification protocol: cDNA were further subjected to either 16 or 20 pre-alveolar macrophageplification cycles using Fluidigm One Tube Prealveolar macrophagep Master Mix (Fluidigm PN 100-5580)
RNEasy® Micro Kit (Qiagen, Germany)
Label N/A
Label protocol N/A
 
Hybridization protocol N/A
Scan protocol N/A
Description S62_16X
Data processing import into R and normalisation based on 3 reference genes using BioConductor packages readqPCR and normqPCR
statistical analysis using Stan via the brms package
 
Submission date Feb 21, 2022
Last update date Feb 22, 2022
Contact name Gian van der Spuy
Organization name Stellenbosch University
Department Biomedical Sciences
Street address Francie van Zijl Dr
City Parow
ZIP/Postal code 7530
Country South Africa
 
Platform ID GPL31965
Series (1)
GSE197113 Targeted gene expression profiling of human myeloid cells from blood and lung compartments of patients with Tuberculosis and other lung diseases

Data table header descriptions
ID_REF
VALUE normalized signal

Data table
ID_REF VALUE
ACTB 4.745747456
ARG1 -0.634161665
CAV1 4.745747456
CD14 4.745747456
CD274 4.745747456
CD33 4.745747456
CD36 4.745747456
CPT1A 4.745747456
CSF2RA 4.745747456
FASLG 4.745747456
FUT4 -9.029981941
G6PD 4.745747456
GAPDH -3.038196426
HADHA -0.62513194
HLA.DRA 4.745747456
HMGB1 4.745747456
IDO1 4.745747456
IFNG 4.745747456
IL10 4.745747456
IL17A -1.756180881

Total number of rows: 48

Table truncated, full table size <1 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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