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Sample GSM5909387 Query DataSets for GSM5909387
Status Public on Feb 22, 2022
Title S58_20X
Sample type RNA
 
Source name Peripheral blood_TDMT428_total RNA_myeloid-derived suppressor cell
Organism Homo sapiens
Characteristics tissue: Peripheral blood
pre_alveolar macrophageplification: 20X
patient condition: Tuberculosis
cell type: myeloid-derived suppressor cell
patient_id: TDMT428
Extracted molecule total RNA
Extraction protocol Pre-alveolar macrophageplification protocol: cDNA were further subjected to either 16 or 20 pre-alveolar macrophageplification cycles using Fluidigm One Tube Prealveolar macrophagep Master Mix (Fluidigm PN 100-5580)
RNEasy® Micro Kit (Qiagen, Germany)
Label N/A
Label protocol N/A
 
Hybridization protocol N/A
Scan protocol N/A
Description S58_20X
Data processing import into R and normalisation based on 3 reference genes using BioConductor packages readqPCR and normqPCR
statistical analysis using Stan via the brms package
 
Submission date Feb 21, 2022
Last update date Feb 22, 2022
Contact name Gian van der Spuy
Organization name Stellenbosch University
Department Biomedical Sciences
Street address Francie van Zijl Dr
City Parow
ZIP/Postal code 7530
Country South Africa
 
Platform ID GPL31965
Series (1)
GSE197113 Targeted gene expression profiling of human myeloid cells from blood and lung compartments of patients with Tuberculosis and other lung diseases

Data table header descriptions
ID_REF
VALUE normalized signal

Data table
ID_REF VALUE
ACTB 16.82063122
ARG1 6.562290951
CAV1 22.41816809
CD14 2.736353683
CD274 6.620123273
CD33 2.233381338
CD36 1.64559379
CPT1A 22.41816809
CSF2RA 22.41816809
FASLG 22.41816809
FUT4 3.526953846
G6PD 2.931798091
GAPDH -0.388129571
HADHA 1.462769844
HLA.DRA -0.876644055
HMGB1 22.41816809
IDO1 22.41816809
IFNG 22.41816809
IL10 5.70692022
IL17A 22.41816809

Total number of rows: 48

Table truncated, full table size <1 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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