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Sample GSM5909382 Query DataSets for GSM5909382
Status Public on Feb 22, 2022
Title S56_16X
Sample type RNA
 
Source name Peripheral blood_TDMT413_total RNA_monocyte
Organism Homo sapiens
Characteristics tissue: Peripheral blood
pre_alveolar macrophageplification: 16X
patient condition: Tuberculosis
cell type: monocyte
patient_id: TDMT413
Extracted molecule total RNA
Extraction protocol Pre-alveolar macrophageplification protocol: cDNA were further subjected to either 16 or 20 pre-alveolar macrophageplification cycles using Fluidigm One Tube Prealveolar macrophagep Master Mix (Fluidigm PN 100-5580)
RNEasy® Micro Kit (Qiagen, Germany)
Label N/A
Label protocol N/A
 
Hybridization protocol N/A
Scan protocol N/A
Description S56_16X
Data processing import into R and normalisation based on 3 reference genes using BioConductor packages readqPCR and normqPCR
statistical analysis using Stan via the brms package
 
Submission date Feb 21, 2022
Last update date Feb 22, 2022
Contact name Gian van der Spuy
Organization name Stellenbosch University
Department Biomedical Sciences
Street address Francie van Zijl Dr
City Parow
ZIP/Postal code 7530
Country South Africa
 
Platform ID GPL31965
Series (1)
GSE197113 Targeted gene expression profiling of human myeloid cells from blood and lung compartments of patients with Tuberculosis and other lung diseases

Data table header descriptions
ID_REF
VALUE normalized signal

Data table
ID_REF VALUE
ACTB 13.52382663
ARG1 16.49654742
CAV1 7.59046922
CD14 4.312342345
CD274 6.331913612
CD33 6.837901081
CD36 3.981014103
CPT1A 20.45621794
CSF2RA 25.44469157
FASLG 10.05558242
FUT4 5.944802956
G6PD 1.58493685
GAPDH -0.045464724
HADHA 1.957341034
HLA.DRA -0.331562046
HMGB1 18.31109215
IDO1 23.25867672
IFNG 9.802661761
IL10 6.232224491
IL17A 18.73141528

Total number of rows: 48

Table truncated, full table size <1 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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