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Sample GSM5909371 Query DataSets for GSM5909371
Status Public on Feb 22, 2022
Title S47_20X
Sample type RNA
 
Source name BAL Fluid_TDMT351_total RNA_myeloid-derived suppressor cell
Organism Homo sapiens
Characteristics tissue: BAL Fluid
pre_alveolar macrophageplification: 20X
patient condition: Tuberculosis
cell type: myeloid-derived suppressor cell
patient_id: TDMT351
Extracted molecule total RNA
Extraction protocol Pre-alveolar macrophageplification protocol: cDNA were further subjected to either 16 or 20 pre-alveolar macrophageplification cycles using Fluidigm One Tube Prealveolar macrophagep Master Mix (Fluidigm PN 100-5580)
RNEasy® Micro Kit (Qiagen, Germany)
Label N/A
Label protocol N/A
 
Hybridization protocol N/A
Scan protocol N/A
Description S47_20X
Data processing import into R and normalisation based on 3 reference genes using BioConductor packages readqPCR and normqPCR
statistical analysis using Stan via the brms package
 
Submission date Feb 21, 2022
Last update date Feb 22, 2022
Contact name Gian van der Spuy
Organization name Stellenbosch University
Department Biomedical Sciences
Street address Francie van Zijl Dr
City Parow
ZIP/Postal code 7530
Country South Africa
 
Platform ID GPL31965
Series (1)
GSE197113 Targeted gene expression profiling of human myeloid cells from blood and lung compartments of patients with Tuberculosis and other lung diseases

Data table header descriptions
ID_REF
VALUE normalized signal

Data table
ID_REF VALUE
ACTB 20.31775829
ARG1 12.77043583
CAV1 20.31775829
CD14 3.895534957
CD274 5.849102937
CD33 3.102804568
CD36 4.496210348
CPT1A 20.31775829
CSF2RA 20.31775829
FASLG 6.145093846
FUT4 2.109546711
G6PD 2.175389532
GAPDH 0.195024266
HADHA 1.02583036
HLA.DRA -2.980700255
HMGB1 20.31775829
IDO1 20.31775829
IFNG 6.212435825
IL10 20.31775829
IL17A 20.31775829

Total number of rows: 48

Table truncated, full table size <1 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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