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Sample GSM5909350 Query DataSets for GSM5909350
Status Public on Feb 22, 2022
Title S24_16X
Sample type RNA
 
Source name BAL Fluid_TBH21639638_total RNA_myeloid-derived suppressor cell
Organism Homo sapiens
Characteristics tissue: BAL Fluid
pre_alveolar macrophageplification: 16X
patient condition: Other Lung Disease
cell type: myeloid-derived suppressor cell
patient_id: TBH21639638
Extracted molecule total RNA
Extraction protocol Pre-alveolar macrophageplification protocol: cDNA were further subjected to either 16 or 20 pre-alveolar macrophageplification cycles using Fluidigm One Tube Prealveolar macrophagep Master Mix (Fluidigm PN 100-5580)
RNEasy® Micro Kit (Qiagen, Germany)
Label N/A
Label protocol N/A
 
Hybridization protocol N/A
Scan protocol N/A
Description S24_16X
Data processing import into R and normalisation based on 3 reference genes using BioConductor packages readqPCR and normqPCR
statistical analysis using Stan via the brms package
 
Submission date Feb 21, 2022
Last update date Feb 22, 2022
Contact name Gian van der Spuy
Organization name Stellenbosch University
Department Biomedical Sciences
Street address Francie van Zijl Dr
City Parow
ZIP/Postal code 7530
Country South Africa
 
Platform ID GPL31965
Series (1)
GSE197113 Targeted gene expression profiling of human myeloid cells from blood and lung compartments of patients with Tuberculosis and other lung diseases

Data table header descriptions
ID_REF
VALUE normalized signal

Data table
ID_REF VALUE
ACTB 12.71502546
ARG1 13.97259557
CAV1 7.32779847
CD14 2.771814727
CD274 5.735527726
CD33 2.845767212
CD36 3.112356423
CPT1A 23.74582949
CSF2RA 18.01003437
FASLG 8.744137432
FUT4 4.303903647
G6PD 1.904719874
GAPDH -0.434028321
HADHA 0.585727488
HLA.DRA -1.931207009
HMGB1 17.66209896
IDO1 23.74582949
IFNG 9.522081526
IL10 9.285938892
IL17A 23.74582949

Total number of rows: 48

Table truncated, full table size <1 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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