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Sample GSM5909349 Query DataSets for GSM5909349
Status Public on Feb 22, 2022
Title S21_20X
Sample type RNA
 
Source name BAL Fluid_TBH150688364_total RNA_alveolar macrophage
Organism Homo sapiens
Characteristics tissue: BAL Fluid
pre_alveolar macrophageplification: 20X
patient condition: Tuberculosis
cell type: alveolar macrophage
patient_id: TBH150688364
Extracted molecule total RNA
Extraction protocol Pre-alveolar macrophageplification protocol: cDNA were further subjected to either 16 or 20 pre-alveolar macrophageplification cycles using Fluidigm One Tube Prealveolar macrophagep Master Mix (Fluidigm PN 100-5580)
RNEasy® Micro Kit (Qiagen, Germany)
Label N/A
Label protocol N/A
 
Hybridization protocol N/A
Scan protocol N/A
Description S21_20X
Data processing import into R and normalisation based on 3 reference genes using BioConductor packages readqPCR and normqPCR
statistical analysis using Stan via the brms package
 
Submission date Feb 21, 2022
Last update date Feb 22, 2022
Contact name Gian van der Spuy
Organization name Stellenbosch University
Department Biomedical Sciences
Street address Francie van Zijl Dr
City Parow
ZIP/Postal code 7530
Country South Africa
 
Platform ID GPL31965
Series (1)
GSE197113 Targeted gene expression profiling of human myeloid cells from blood and lung compartments of patients with Tuberculosis and other lung diseases

Data table header descriptions
ID_REF
VALUE normalized signal

Data table
ID_REF VALUE
ACTB 13.10569403
ARG1 12.05897996
CAV1 10.68231493
CD14 2.549548188
CD274 2.875257351
CD33 0.928015896
CD36 2.839705738
CPT1A 18.63721211
CSF2RA 26.25588908
FASLG 10.06925086
FUT4 3.162409387
G6PD 0.004631727
GAPDH 0.593542678
HADHA -0.043610658
HLA.DRA 0.39286883
HMGB1 19.55334399
IDO1 26.25588908
IFNG 7.868610956
IL10 5.894924888
IL17A 15.91889633

Total number of rows: 48

Table truncated, full table size <1 Kbytes.




Supplementary data files not provided
Processed data included within Sample table
Processed data are available on Series record

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