|
| Status |
Public on Apr 19, 2023 |
| Title |
Oc4mu |
| Sample type |
SRA |
| |
|
| Source name |
hindlimb muscles
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
gender: male
age: 22 months
treatment: control
|
| Extracted molecule |
total RNA |
| Extraction protocol |
10x Genomics protocol using GenCode Single-Cell 3’ Gel Bead and Library V3 kit
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina NovaSeq 6000 |
| |
|
| Data processing |
Sequences were demultiplexed using CellRanger version 2.0 (10x Genomics) with default parameters.
Reads were aligned to the mm10plus genome using STAR.
Gene counts were produced using HTSEQ with default parameters except “stranded” was set to false and “mode” was set to intersection-nonempty.
Genome_build: mm10plus
|
| |
|
| Submission date |
Feb 08, 2022 |
| Last update date |
Apr 19, 2023 |
| Contact name |
Ling Liu |
| E-mail(s) |
lingliu@stanford.edu
|
| Organization name |
Stanford University
|
| Street address |
300 Pasteur Drive
|
| City |
Palo Alto |
| ZIP/Postal code |
94306 |
| Country |
USA |
| |
|
| Platform ID |
GPL24247 |
| Series (2) |
| GSE196361 |
Exercise reprograms the inflammatory landscape of multiple stem cell compartments during mammalian aging IV |
| GSE196364 |
Exercise reprograms the inflammatory landscape of multiple stem cell compartments during mammalian aging |
|
| Relations |
| BioSample |
SAMN25756462 |
| SRA |
SRX14102044 |
