|
Status |
Public on Aug 16, 2010 |
Title |
AJ_AP8_2_A9 |
Sample type |
genomic |
|
|
Source name |
DNA extraced from blood
|
Organism |
Homo sapiens |
Characteristics |
population: Ashkenazi Jew individual id: AP8_2_A9
|
Extracted molecule |
genomic DNA |
Extraction protocol |
DNA was extraced from blood using theGentra PureGene DNA extraction kit or the Qiagen DNA extraction kit
|
Label |
biotin
|
Label protocol |
As per manufacturer (Affymetrix)
|
|
|
Hybridization protocol |
DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
|
Scan protocol |
The Arrays were then washed using Affymetrix fluidics stations, and scanned using the Gene Chip Scanner 3000.
|
Data processing |
Genotype data was extracted from CEL files using Affymetrix birdseed v2.0. We removed SNPs that failed the Hardy-Weinberg exact test P < 0.000001 and had a call rate <95% across all samples primary data description: Genotype data is in PLINK ped and map formats - GSE23636_AJ_471_732k.ped and GSE23636_AJ_471_732k.map (see readme file for description). The PLINK version: 1.06.
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|
|
Submission date |
Aug 16, 2010 |
Last update date |
Aug 16, 2010 |
Contact name |
Steven M Bray |
E-mail(s) |
smbray@emory.edu
|
Organization name |
Emory University School of Medicine
|
Department |
Human Genetics
|
Street address |
615 Michael Street
|
City |
Atlanta |
State/province |
GA |
ZIP/Postal code |
30322 |
Country |
USA |
|
|
Platform ID |
GPL6801 |
Series (1) |
GSE23636 |
Population genetic structure of the Ashkenazi Jewish population |
|