|
| Status |
Public on Aug 16, 2010 |
| Title |
AJ_APG12 |
| Sample type |
genomic |
| |
|
| Source name |
DNA extraced from blood
|
| Organism |
Homo sapiens |
| Characteristics |
population: Ashkenazi Jew
individual id: APG12
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
DNA was extraced from blood using theGentra PureGene DNA extraction kit or the Qiagen DNA extraction kit
|
| Label |
biotin
|
| Label protocol |
As per manufacturer (Affymetrix)
|
| |
|
| Hybridization protocol |
DNA was restriction digested, PCR amplified, fragmented, labeled and hybridized to each array according to the manufacturer's instructions.
|
| Scan protocol |
The Arrays were then washed using Affymetrix fluidics stations, and scanned using the Gene Chip Scanner 3000.
|
| Data processing |
Genotype data was extracted from CEL files using Affymetrix birdseed v2.0. We removed SNPs that failed the Hardy-Weinberg exact test P < 0.000001 and had a call rate <95% across all samples
primary data description: Genotype data is in PLINK ped and map formats - GSE23636_AJ_471_732k.ped and GSE23636_AJ_471_732k.map (see readme file for description). The PLINK version: 1.06.
|
| |
|
| Submission date |
Aug 16, 2010 |
| Last update date |
Aug 16, 2010 |
| Contact name |
Steven M Bray |
| E-mail(s) |
smbray@emory.edu
|
| Organization name |
Emory University School of Medicine
|
| Department |
Human Genetics
|
| Street address |
615 Michael Street
|
| City |
Atlanta |
| State/province |
GA |
| ZIP/Postal code |
30322 |
| Country |
USA |
| |
|
| Platform ID |
GPL6801 |
| Series (1) |
| GSE23636 |
Population genetic structure of the Ashkenazi Jewish population |
|
