|
| Status |
Public on Jan 31, 2021 |
| Title |
HG03521 cell line replicate 3 |
| Sample type |
genomic |
| |
|
| Source name |
purified gDNA
|
| Organism |
Homo sapiens |
| Characteristics |
cell line: HG03521
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
an automated magnetic bead purification protocol (Hamilton Microlab STAR w/ Promega ReliaPrep Isolation system) was used to extract genomic DNA that was eluted in TE buffer (pH 8.0, 1mM EDTA)
|
| Label |
2D barcodes
|
| Label protocol |
sample vials containing gDNA extract were stored and individually labeled with unique 2D-barcodes
|
| |
|
| Hybridization protocol |
samples were incubated at 48C overnight before undergoing enzymatic base extension and fluorescent staining
|
| Scan protocol |
the beadchips were scanned using the iScan system (Illumina)
|
| Description |
Genomic DNA extracted from B-lymphocytes by Coriell and genotyped using Infinium Global Screening Array (GSAMD-24v1-0_20011747_A1) beadchip (Illumina)
|
| Data processing |
genomic DNA was genotyped using the Infinium Global Screening Array (GSAMD-24v1-0_20011747_A1) beadchip (Illumina)
|
| |
|
| Submission date |
Jan 30, 2021 |
| Last update date |
Jan 31, 2021 |
| Contact name |
Jeremiah Li |
| E-mail(s) |
jeremy.li@gencove.com
|
| Organization name |
Gencove
|
| Street address |
430 E 29th St 14th Floor, 14th Floor
|
| City |
New York |
| State/province |
NY |
| ZIP/Postal code |
10016 |
| Country |
USA |
| |
|
| Platform ID |
GPL23391 |
| Series (1) |
| GSE165845 |
Low-pass sequencing increases the power of GWAS and decreases measurement error of polygenic risk scores compared to genotyping arrays |
|
