GEO help: Mouse over screen elements for information.
Status
Public on Dec 26, 2018
Title
Infinium Global Screening Array
Technology type
oligonucleotide beads
Distribution
commercial
Organism
Homo sapiens Manufacturer
Illumina, Inc.
Manufacture protocol
See manufacturer's website
Submission date
Apr 30, 2017
Last update date
Dec 26, 2018
Contact name
Justin C St. John
E-mail(s)
justin.stjohn@hudson.org.au Phone
+61399024749
Organization name
Hudson Institute of Medical Research
Department
Centre for Genetic Diseases
Lab
Mitochondrial Genetics
Street address
27-31 Wright St
City
Clayton
State/province
Vic
ZIP/Postal code
3168
Country
Australia
Samples (1197)
GSM2592830 , GSM2592831 , GSM2592832 , GSM2592833 , GSM2592834 , GSM2592835
GSM2592836 ,
GSM2592837 ,
GSM2592838 ,
GSM2592839 ,
GSM2592840 ,
GSM2592841 ,
GSM2592940 ,
GSM2592941 ,
GSM2592942 ,
GSM2592943 ,
GSM2592944 ,
GSM2592945 ,
GSM2592946 ,
GSM2592947 ,
GSM2592948 ,
GSM4497137 ,
GSM4497138 ,
GSM4497139 ,
GSM4497140 ,
GSM4497141 ,
GSM4497142 ,
GSM4497143 ,
GSM4497144 ,
GSM4497145 ,
GSM4497146 ,
GSM4497147 ,
GSM4497148 ,
GSM4497149 ,
GSM4497150 ,
GSM4497151 ,
GSM4497152 ,
GSM4497153 ,
GSM4497154 ,
GSM4497155 ,
GSM4497156 ,
GSM4497157 ,
GSM4497158 ,
GSM4497159 ,
GSM4497160 ,
GSM4497161 ,
GSM4497162 ,
GSM4497163 ,
GSM4497164 ,
GSM4497165 ,
GSM4497166 ,
GSM4497167 ,
GSM4497168 ,
GSM4497169 ,
GSM4497170 ,
GSM4497171 ,
GSM4497172 ,
GSM4497173 ,
GSM4497174 ,
GSM4497175 ,
GSM4497176 ,
GSM4497177 ,
GSM4497178 ,
GSM4497179 ,
GSM4497180 ,
GSM4497181 ,
GSM4497182 ,
GSM4497183 ,
GSM4497184 ,
GSM4497185 ,
GSM4497186 ,
GSM4497187 ,
GSM4497188 ,
GSM4497189 ,
GSM4497190 ,
GSM4497191 ,
GSM4497192 ,
GSM4497193 ,
GSM4497194 ,
GSM4497195 ,
GSM4497196 ,
GSM4497197 ,
GSM4497198 ,
GSM4497199 ,
GSM4497200 ,
GSM4497201 ,
GSM4497202 ,
GSM4497203 ,
GSM4497204 ,
GSM4497205 ,
GSM4497206 ,
GSM4497207 ,
GSM4497208 ,
GSM4497209 ,
GSM4497210 ,
GSM4497211 ,
GSM4497212 ,
GSM4497213 ,
GSM4497214 ,
GSM4497215 ,
GSM4497216 ,
GSM4497217 ,
GSM4497218 ,
GSM4497219 ,
GSM4497220 ,
GSM4497221 ,
GSM4497222 ,
GSM4497223 ,
GSM4497224 ,
GSM4497225 ,
GSM4497226 ,
GSM4497227 ,
GSM4497228 ,
GSM4497229 ,
GSM4497230 ,
GSM4497231 ,
GSM4497232 ,
GSM4497233 ,
GSM4497234 ,
GSM4497235 ,
GSM4497236 ,
GSM4497237 ,
GSM4497238 ,
GSM4497239 ,
GSM4497240 ,
GSM4497241 ,
GSM4497242 ,
GSM4497243 ,
GSM4497244 ,
GSM4497245 ,
GSM4497246 ,
GSM4497247 ,
GSM4497248 ,
GSM4497249 ,
GSM4497250 ,
GSM4497251 ,
GSM4497252 ,
GSM4497253 ,
GSM4497254 ,
GSM4497255 ,
GSM4497256 ,
GSM4497257 ,
GSM4497258 ,
GSM4497259 ,
GSM4497260 ,
GSM4497261 ,
GSM4497262 ,
GSM4497263 ,
GSM4497264 ,
GSM4497265 ,
GSM4497266 ,
GSM4497267 ,
GSM4497268 ,
GSM4497269 ,
GSM4497270 ,
GSM4497271 ,
GSM4497272 ,
GSM4497273 ,
GSM4497274 ,
GSM4497275 ,
GSM4497276 ,
GSM4497277 ,
GSM4497278 ,
GSM4497279 ,
GSM4497280 ,
GSM4497281 ,
GSM4497282 ,
GSM4497283 ,
GSM4497284 ,
GSM4497285 ,
GSM4497286 ,
GSM4497287 ,
GSM4497288 ,
GSM4497289 ,
GSM4497290 ,
GSM4497291 ,
GSM4497292 ,
GSM4497293 ,
GSM4497294 ,
GSM4497295 ,
GSM4497296 ,
GSM4497297 ,
GSM4497298 ,
GSM4497299 ,
GSM4497300 ,
GSM4497301 ,
GSM4497302 ,
GSM4497303 ,
GSM4497304 ,
GSM4497305 ,
GSM4497306 ,
GSM5050990 ,
GSM5050991 ,
GSM5050992 ,
GSM5050993 ,
GSM5050994 ,
GSM5050995 ,
GSM5050996 ,
GSM5050997 ,
GSM5050998 ,
GSM5050999 ,
GSM5051000 ,
GSM5051001 ,
GSM5051002 ,
GSM5051003 ,
GSM5051004 ,
GSM5051005 ,
GSM5051006 ,
GSM5051007 ,
GSM5051008 ,
GSM5051009 ,
GSM5051010 ,
GSM5051011 ,
GSM5051012 ,
GSM5051013 ,
GSM5051014 ,
GSM5051015 ,
GSM5051016 ,
GSM5051017 ,
GSM5051018 ,
GSM5051019 ,
GSM5051020 ,
GSM5051021 ,
GSM5051022 ,
GSM5051023 ,
GSM5051024 ,
GSM5051025 ,
GSM5051026 ,
GSM5051027 ,
GSM5051028 ,
GSM5051029 ,
GSM5051030 ,
GSM5051031 ,
GSM5051032 ,
GSM5051033 ,
GSM5051034 ,
GSM5051035 ,
GSM5051036 ,
GSM5051037 ,
GSM5051038 ,
GSM5051039 ,
GSM5051040 ,
GSM5051041 ,
GSM5051042 ,
GSM5051043 ,
GSM5051044 ,
GSM5051045 ,
GSM5051046 ,
GSM5051047 ,
GSM5051048 ,
GSM5051049 ,
GSM5051050 ,
GSM5051051 ,
GSM5051052 ,
GSM5051053 ,
GSM5051054 ,
GSM5051055 ,
GSM5051056 ,
GSM5051057 ,
GSM5051058 ,
GSM5051059 ,
GSM5051060 ,
GSM5051061 ,
GSM5051062 ,
GSM5051063 ,
GSM5051064 ,
GSM5051065 ,
GSM5051066 ,
GSM5051067 ,
GSM5051068 ,
GSM5051069 ,
GSM5051070 ,
GSM5051071 ,
GSM5051072 ,
GSM5051073 ,
GSM5051074 ,
GSM5051075 ,
GSM5051076 ,
GSM5051077 ,
GSM5051078 ,
GSM5051079 ,
GSM5051080 ,
GSM5051081 ,
GSM5051082 ,
GSM5051083 ,
GSM5051084 ,
GSM5051085 ,
GSM5051086 ,
GSM5051087 ,
GSM5051088 ,
GSM5051089 ,
GSM5051090 ,
GSM5051091 ,
GSM5051092 ,
GSM5051093 ,
GSM5051094 ,
GSM5051095 ,
GSM5051096 ,
GSM5051097 ,
GSM5051098 ,
GSM5051099 ,
GSM5051100 ,
GSM5051101 ,
GSM5051102 ,
GSM5051103 ,
GSM5051104 ,
GSM5051105 ,
GSM5051106 ,
GSM5051107 ,
GSM5051108 ,
GSM5051109 ,
GSM5051110 ,
GSM5051111 ,
GSM5051112 ,
GSM5051113 ,
GSM5051114 ,
GSM5051115 ,
GSM5051116 ,
GSM5051117 ,
GSM5051118 ,
GSM5051119 ,
GSM5051120 ,
GSM5051121 ,
GSM5051122 ,
GSM5051123 ,
GSM5051124 ,
GSM5051125 ,
GSM5051126 ,
GSM5051127 ,
GSM5051128 ,
GSM5051129 ,
GSM5051130 ,
GSM5051131 ,
GSM5051132 ,
GSM5051133 ,
GSM5051134 ,
GSM5051135 ,
GSM5051136 ,
GSM5051137 ,
GSM5051138 ,
GSM5051139 ,
GSM5051140 ,
GSM5051141 ,
GSM5051142 ,
GSM5051143 ,
GSM5051144 ,
GSM5051145 ,
GSM5051146 ,
GSM5051147 ,
GSM5051148 ,
GSM5051149 ,
GSM5051150 ,
GSM5051151 ,
GSM5051152 ,
GSM5051153 ,
GSM5051154 ,
GSM5051155 ,
GSM5051156 ,
GSM5051157 ,
GSM5051158 ,
GSM5051159 ,
GSM5051160 ,
GSM5051161 ,
GSM5051162 ,
GSM5051163 ,
GSM5051164 ,
GSM5051165 ,
GSM5051166 ,
GSM5051167 ,
GSM5051168 ,
GSM5051169 ,
GSM5051170 ,
GSM5051171 ,
GSM5051172 ,
GSM5051173 ,
GSM5051174 ,
GSM5051175 ,
GSM5051176 ,
GSM5051177 ,
GSM5051178 ,
GSM5051179 ,
GSM5051180 ,
GSM5051181 ,
GSM5051182 ,
GSM5051183 ,
GSM5051184 ,
GSM5051185 ,
GSM5051186 ,
GSM5051187 ,
GSM5051188 ,
GSM5051189 ,
GSM5051190 ,
GSM5051191 ,
GSM5051192 ,
GSM5051193 ,
GSM5051194 ,
GSM5051195 ,
GSM5051196 ,
GSM5051197 ,
GSM5051198 ,
GSM5051199 ,
GSM5051200 ,
GSM5051201 ,
GSM5051202 ,
GSM5051203 ,
GSM5051204 ,
GSM5051205 ,
GSM5051206 ,
GSM5051207 ,
GSM5051208 ,
GSM5051209 ,
GSM5051210 ,
GSM5051211 ,
GSM5051212 ,
GSM5051213 ,
GSM5051214 ,
GSM5051215 ,
GSM5051216 ,
GSM5051217 ,
GSM5051218 ,
GSM5051219 ,
GSM5051220 ,
GSM5051221 ,
GSM5051222 ,
GSM5051223 ,
GSM5051224 ,
GSM5051225 ,
GSM5051226 ,
GSM5051227 ,
GSM5051228 ,
GSM5051229 ,
GSM5051230 ,
GSM5051231 ,
GSM5051232 ,
GSM5051233 ,
GSM5051234 ,
GSM5051235 ,
GSM5051236 ,
GSM5051237 ,
GSM5051238 ,
GSM5051239 ,
GSM5051240 ,
GSM5051241 ,
GSM5051242 ,
GSM5051243 ,
GSM5051244 ,
GSM5051245 ,
GSM5051246 ,
GSM5051247 ,
GSM5051248 ,
GSM5051249 ,
GSM5051250 ,
GSM5051251 ,
GSM5051252 ,
GSM5051253 ,
GSM5051254 ,
GSM5051255 ,
GSM5051256 ,
GSM5051257 ,
GSM5051258 ,
GSM5051259 ,
GSM5051260 ,
GSM5051261 ,
GSM5051262 ,
GSM5051263 ,
GSM5051264 ,
GSM5051265 ,
GSM5051266 ,
GSM5051267 ,
GSM5051268 ,
GSM5051269 ,
GSM5051270 ,
GSM5051271 ,
GSM5051272 ,
GSM5051273 ,
GSM5051274 ,
GSM5051275 ,
GSM5051276 ,
GSM5051277 ,
GSM5051278 ,
GSM5051279 ,
GSM5051280 ,
GSM5051281 ,
GSM5051282 ,
GSM5051283 ,
GSM5051284 ,
GSM5051285 ,
GSM5051286 ,
GSM5051287 ,
GSM5051288 ,
GSM5051289 ,
GSM5051290 ,
GSM5051291 ,
GSM5051292 ,
GSM5051293 ,
GSM5051294 ,
GSM5051295 ,
GSM5051296 ,
GSM5051297 ,
GSM5051298 ...
Accession list truncated, click here to browse through all related public accessions You can also download a list of all accessions here Series (6)
GSE98366 How the mtDNA load at the beginning of tumorigenesis affects tumourigenesis
GSE98377 Impact of DNA demethylation agents (5-azacitidine or vitamin C) on DNA copy number in gliobalstoma HSR-GBM1 cells
GSE98693 Induced DNA demethylation, genome instability and transcription
GSE149314 Patient genetics is linked to chronic wound microbiome composition and healing
GSE165845 Low-pass sequencing increases the power of GWAS and decreases measurement error of polygenic risk scores compared to genotyping arrays
GSE184150 Genome-Wide Association Study of Hospitalized COVID-19 Patients in the United Arab Emirates
Data table header descriptions ID Probe name
SPOT_ID IlmnID = Provides a summary of the pertinent information about the SNP or Indel probe. Genome Build is zero if unknown. For indels, Plus/Minus is reported instead of Top/Bot.
Index Address For Infinium II bead types, the Address ID for the probe used for both A and B alleles
Chr Position IlmnStrand The Top/Bot (for SNPs) or Plus/Minus (for Indels) designation of the ILMN strand (Design strand).
SNP SNP alleles as reported by assay probes. Alleles on the Design strand (the ILMN strand) are listed in order of Allele A/B.
Allele_ProbeSeq probe sequence
GenTrain.Score Frac.A Frac.C Frac.G Frac.T
Data table ID SPOT_ID Index Address Chr Position IlmnStrand SNP Allele_ProbeSeq GenTrain.Score Frac.A Frac.C Frac.G Frac.T 1:100292476
1:100292476-0_T_F_2346041289
1
7627986
1
100292476
TOP
[A/G]
TAGAGACTTTGTTGAAAGAAAGAGAAAGAGAGAAAGAGAAAGAAAGAAAG
0.6874669
0.6311476
0.03278688
0.2786885
0.05737705
1:101064936
1:101064936-0_T_F_2346041295
2
59776422
1
101064936
TOP
[A/G]
ATGGTATTGCGTAGGTTTTCTTCTAAGGTTTTTATGGTTTTAGGTCTAAC
0.681638
0.2459016
0.1065574
0.2295082
0.4180328
1:103380393
1:103380393-0_B_R_2346041316
3
94724281
1
103380393
BOT
[T/C]
AATAAACTTTTATGCAAAACTTGTAAGATAACTCTTCTTTCCTTCTTCTT
0.8729582
0.3688525
0.1885246
0.147541
0.295082
1:104303716
1:104303716-0_B_R_2346041324
4
61764957
1
104303716
BOT
[T/C]
TTTAAACTCTCCTGCAAGGATGTTATGTTACTCTTAAACCCTAACTGCTC
0.8714744
0.2377049
0.1803279
0.2459016
0.3360656
1:104864464
1:104864464-0_T_R_2346041326
5
84781855
1
104864464
TOP
[A/G]
GTGCAGTTAGCCTGTATACATTTGCAATTGCAGTTAGCCTGTGTGTGTGT
0.6460657
0.2540984
0.09836066
0.2295082
0.4180328
1:106737318
1:106737318-0_T_R_2346041332
6
47684575
1
106737318
TOP
[A/C]
TCAACGTTTGTATATCTGAATAAGATCTTATTTATTCTTTGCTTACAAAA
0.8674576
0.2786885
0.1557377
0.1557377
0.4098361
1:109439680
1:109439680-0_T_F_2348625138
7
95666109
1
109439680
TOP
[A/G]
GTTGGGCAATGCTTATTTCTATTTGCATGATTATGCCAAAGCATTAGAAT
0.9025418
0.295082
0.1803279
0.1393443
0.3852459
1:111119214
1:111119214-0_B_F_2346041355
8
4796150
1
111119214
BOT
[T/C]
TAAGAGACTTCTTGCTTCTGTTTCATCCAATTCTGTTGTATCCTATCCTA
0.8215221
0.352459
0.05737705
0.3934426
0.1967213
1:114483147
1:114483147-0_T_F_2346041367
9
94705909
1
114483147
TOP
[A/C]
GGGATGTTTCAGGACAGAGTAGCAACGACAAATATTATACCCACAGCAAA
0.8250768
0.3196721
0.3360656
0.1721312
0.1721312
1:118227370
1:118227370-0_T_R_2346041384
10
78807930
1
118227370
TOP
[A/G]
GAAAATGCATACCCTGCCTTAAAACATTGTTTTTCTAAAAATCCTGTTCT
0.8240662
0.4180328
0.1885246
0.1229508
0.2704918
1:1183442
1:1183442-0_T_F_2346041385
11
31711899
1
1183442
TOP
[A/G]
GTCACCCACTGGCAATGAGCTCCCCTGTGACTCTAGACAGAACAGGCTGG
0.8653011
0.2377049
0.2704918
0.295082
0.1967213
1:11855218
1:11855218-0_T_F_2348625346
12
28670136
1
11855218
TOP
[A/G]
TCCACATCCCCAGGCGCTTCAGCACCTCTGTGGTAGCCATCTCGCGGTTG
0.8237632
0.1885246
0.3196721
0.3114754
0.1803279
1:118933200
1:118933200-0_B_F_2346041391
13
36688272
1
118933200
BOT
[T/G]
TATTATTCTCACCATGACTTAAAGAAGGTGCTTCATAAAGTGTTCCGTGG
0.8594788
0.442623
0.1639344
0.147541
0.2459016
1:11907740
1:11907740-0_B_R_2348625055
14
23667507
1
11907740
BOT
[T/C]
GGGGAGAGACAGAGCAGCAAGCAGTGGATTGCTCCTTGACGACGCCAGCA
0.8487301
0.1967213
0.2540984
0.3196721
0.2295082
1:119872141
1:119872141-0_B_F_2346041397
15
94622390
1
119872141
BOT
[T/C]
TTAGAGTGAGTAAAGGGACAGCAGGTGGTCAGGCCCTGCCAACAGCAGGA
0.8914661
0.204918
0.3032787
0.2786885
0.2131148
1:120056925
1:120056925-0_B_F_2348625506
16
37662834
1
120056925
BOT
[T/C]
CAAGAAGGCCCCAAGCATCCGAGGACAGTTCTACTATATCTCAGATGACA
0.5628911
0.1967213
0.1885246
0.3196721
0.295082
1:120123727
1:120123727-0_B_R_2346041404
17
63655280
1
120123727
BOT
[T/G]
ACCCGAGCTCTCTCATCTGCGCTCTGTACATGCTTTCCAGAAAGCAGAGG
0.8543575
0.2704918
0.2131148
0.3688525
0.147541
1:120608075
1:120608075-0_B_R_2346041408
18
50791228
1
120608075
BOT
[T/C]
TCATTCACTGTCCTCATTGCTTCCATCTCGTGTACAAATGCGCTTATGTG
0.8050629
0.3196721
0.1721312
0.2459016
0.2622951
1:143928232
1:143928232-0_T_R_2346041526
19
59776239
1
143928232
TOP
[A/G]
CAACGTATTAATAAGCAAAAATAATGAACCCTGAAAGCTGGAAGGACCTT
0.7641606
0.3606557
0.1639344
0.2213115
0.2540984
1:145030589
1:145030589-0_T_R_2346041550
20
35683371
1
145030589
TOP
[A/C]
GCCGATGGGAATATCTGTTTGGTGGGTGTCTCCTTATTGTAGAATGGATA
0.7884539
0.3032787
0.1639344
0.1967213
0.3360656
700078 124204 Kbytes .Supplementary file Size Download File type/resource GPL23391_GSAMD-24v1-0_20011747_A1.csv.gz
72.1 Mb
(ftp) (http) CSV
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