|
Status |
Public on Jan 31, 2021 |
Title |
HG00262 cell line replicate 3 |
Sample type |
genomic |
|
|
Source name |
purified gDNA
|
Organism |
Homo sapiens |
Characteristics |
cell line: HG00262
|
Extracted molecule |
genomic DNA |
Extraction protocol |
an automated magnetic bead purification protocol (Hamilton Microlab STAR w/ Promega ReliaPrep Isolation system) was used to extract genomic DNA that was eluted in TE buffer (pH 8.0, 1mM EDTA)
|
Label |
2D barcodes
|
Label protocol |
sample vials containing gDNA extract were stored and individually labeled with unique 2D-barcodes
|
|
|
Hybridization protocol |
samples were incubated at 48C overnight before undergoing enzymatic base extension and fluorescent staining
|
Scan protocol |
the beadchips were scanned using the iScan system (Illumina)
|
Description |
Genomic DNA extracted from B-lymphocytes by Coriell and genotyped using Infinium Global Screening Array (GSAMD-24v1-0_20011747_A1) beadchip (Illumina)
|
Data processing |
genomic DNA was genotyped using the Infinium Global Screening Array (GSAMD-24v1-0_20011747_A1) beadchip (Illumina)
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|
|
Submission date |
Jan 30, 2021 |
Last update date |
Jan 31, 2021 |
Contact name |
Jeremiah Li |
E-mail(s) |
jeremy.li@gencove.com
|
Organization name |
Gencove
|
Street address |
430 E 29th St 14th Floor, 14th Floor
|
City |
New York |
State/province |
NY |
ZIP/Postal code |
10016 |
Country |
USA |
|
|
Platform ID |
GPL23391 |
Series (1) |
GSE165845 |
Low-pass sequencing increases the power of GWAS and decreases measurement error of polygenic risk scores compared to genotyping arrays |
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