|
| Status |
Public on Nov 12, 2020 |
| Title |
LSD1-LKO-3-Sequences |
| Sample type |
SRA |
| |
|
| Source name |
Liver
|
| Organism |
Mus musculus |
| Characteristics |
tissue: Liver
genotype/variation: LSD1-LKO
strain: C57BL/6
|
| Treatment protocol |
Liver specific LSD1 knockout in adult mice.
|
| Extracted molecule |
total RNA |
| Extraction protocol |
Total RNA was extracted from liver of LSD1-Lko and control mice using the RNeasy kit (QIAGEN).
poly-A enrichment
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 4000 |
| |
|
| Description |
LSD1-LKO RNA-seq processed data
|
| Data processing |
RNA-STAR for mapping
StringTie for transcript assembly
DESeq2 for differential expression
Genome_build: mm10
Supplementary_files_format_and_content: Excel file
|
| |
|
| Submission date |
Nov 11, 2020 |
| Last update date |
Nov 12, 2020 |
| Contact name |
QIN YANG |
| E-mail(s) |
qin.yang@uci.edu
|
| Phone |
949-824-0232
|
| Organization name |
University of California, Irvine
|
| Department |
Physiology and Biophysics
|
| Street address |
825 Health Science Rd.
|
| City |
Irvine |
| ZIP/Postal code |
92697 |
| Country |
USA |
| |
|
| Platform ID |
GPL21103 |
| Series (1) |
| GSE161286 |
Anterograde Regulation of Nuclear-encoded Mitochondrial Genes and FGF21 Signaling by Hepatic Histone Demethylase LSD1 [RNA-seq] |
|
| Relations |
| BioSample |
SAMN16770538 |
| SRA |
SRX9486458 |
