|
| Status |
Public on Aug 13, 2010 |
| Title |
MDG 043 - breast - non-cancer |
| Sample type |
RNA |
| |
|
| Channel 1 |
| Source name |
Biopsy from area with some mammographic density
|
| Organism |
Homo sapiens |
| Characteristics |
tissue: breast
clinical characteristic/disease status: area with some mammographic density
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNeasy Mini protocol, Qiagen, Valencia, CA
|
| Label |
Cy5
|
| Label protocol |
Agilent Low RNA Input Fluorescent Linear Amplification Kit Protocol
|
| |
|
| Channel 2 |
| Source name |
Universal reference
|
| Organism |
Homo sapiens |
| Characteristics |
reference source: Stratagene, LaJolla, CA
|
| Extracted molecule |
total RNA |
| Extraction protocol |
RNeasy Mini protocol, Qiagen, Valencia, CA
|
| Label |
Cy3
|
| Label protocol |
Agilent Low RNA Input Fluorescent Linear Amplification Kit Protocol
|
| |
|
| |
| Hybridization protocol |
Agilent 60-mer oligo microarray processing protocol (Surehyb enables/SSPE)
|
| Scan protocol |
Agilent scanner (Agilent Technologies, Santa Clara, CA)
|
| Description |
281206-MDG043_251239125932_S01_GE2-SSPE_91_2.txt
|
| Data processing |
Feature Extraction 9.1.3.1 software and lowess normalization was used.
|
| |
|
| Submission date |
Oct 21, 2009 |
| Last update date |
Aug 13, 2010 |
| Contact name |
Vilde Drageset Haakensen |
| E-mail(s) |
vilde.drageset.haakensen@rr-research.no
|
| Phone |
+47 98669297
|
| Organization name |
The Norwegian Radium Hospital
|
| Department |
Dept of Genetics
|
| Street address |
Montebello
|
| City |
Oslo |
| ZIP/Postal code |
0310 |
| Country |
Norway |
| |
|
| Platform ID |
GPL6848 |
| Series (1) |
| GSE18672 |
Mammographic density and genetics - A study of breast biopsies in relation to mammoraphic density |
|
