|
| Status |
Public on Aug 26, 2022 |
| Title |
cry6_p10mut_192853 |
| Sample type |
SRA |
| |
|
| Source name |
olfactory epithelium
|
| Organism |
Mus musculus |
| Characteristics |
strain: OIVT;Kir2.1
development stage: P10
tissue: olfactory epithelium
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
Olfactory epithelium was dissected. RNA was extracted in TRIzol.
mRNA-Seq Sample Prep Kit (Illumina) was used to create libraries.
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina Genome Analyzer II |
| |
|
| Description |
polyA RNA extracted from mouse olfactory epithelia across different development stage
|
| Data processing |
Raw reads were demultiplexed into Fastq format allowing up to one mismatch using Illumina bcl2fastq2 v2.18.
Reads were aligned to UCSC genome mm10 with STAR aligner (version STAR_2.6.1c ), using Ensembl 91 gene models.
TPM values were generated using RSEM (version v1.3.0 ).
Genome_build: mm10
Supplementary_files_format_and_content: TPM table and count table.
|
| |
|
| Submission date |
Mar 24, 2020 |
| Last update date |
Aug 26, 2022 |
| Contact name |
Congrong Ron Yu |
| E-mail(s) |
cry@stowers.org
|
| Phone |
816-926-4334
|
| Organization name |
Stowers Insitute for Medical Research
|
| Lab |
Yu
|
| Street address |
1000 E 50th St
|
| City |
Kansas City |
| State/province |
Missouri |
| ZIP/Postal code |
64110-2262 |
| Country |
USA |
| |
|
| Platform ID |
GPL9250 |
| Series (2) |
| GSE147459 |
Time series RNA-Seq of the olfactory epithelia of the mouse |
| GSE147463 |
Molecular Control of Circuit Plasticity and the Permanence of Imprinted Odor Memory |
|
| Relations |
| BioSample |
SAMN14439996 |
| SRA |
SRX7981867 |
