|
Status |
Public on Aug 26, 2022 |
Title |
cry6_p10mut_192853 |
Sample type |
SRA |
|
|
Source name |
olfactory epithelium
|
Organism |
Mus musculus |
Characteristics |
strain: OIVT;Kir2.1 development stage: P10 tissue: olfactory epithelium
|
Extracted molecule |
polyA RNA |
Extraction protocol |
Olfactory epithelium was dissected. RNA was extracted in TRIzol. mRNA-Seq Sample Prep Kit (Illumina) was used to create libraries.
|
|
|
Library strategy |
RNA-Seq |
Library source |
transcriptomic |
Library selection |
cDNA |
Instrument model |
Illumina Genome Analyzer II |
|
|
Description |
polyA RNA extracted from mouse olfactory epithelia across different development stage
|
Data processing |
Raw reads were demultiplexed into Fastq format allowing up to one mismatch using Illumina bcl2fastq2 v2.18. Reads were aligned to UCSC genome mm10 with STAR aligner (version STAR_2.6.1c ), using Ensembl 91 gene models. TPM values were generated using RSEM (version v1.3.0 ). Genome_build: mm10 Supplementary_files_format_and_content: TPM table and count table.
|
|
|
Submission date |
Mar 24, 2020 |
Last update date |
Aug 26, 2022 |
Contact name |
Congrong Ron Yu |
E-mail(s) |
cry@stowers.org
|
Phone |
816-926-4334
|
Organization name |
Stowers Insitute for Medical Research
|
Lab |
Yu
|
Street address |
1000 E 50th St
|
City |
Kansas City |
State/province |
Missouri |
ZIP/Postal code |
64110-2262 |
Country |
USA |
|
|
Platform ID |
GPL9250 |
Series (2) |
GSE147459 |
Time series RNA-Seq of the olfactory epithelia of the mouse |
GSE147463 |
Molecular Control of Circuit Plasticity and the Permanence of Imprinted Odor Memory |
|
Relations |
BioSample |
SAMN14439996 |
SRA |
SRX7981867 |