|
|
GEO help: Mouse over screen elements for information. |
|
Status |
Public on Aug 29, 2022 |
Title |
Time series RNA-Seq of the olfactory epithelia of the mouse |
Organism |
Mus musculus |
Experiment type |
Expression profiling by high throughput sequencing
|
Summary |
A series of RNA-Seq experiment were conducted to study the transcriptome changes of olfactory sensory neurons during the critical period. We conducted RNA-seq of the olfactory epithelia at P0, P3, P7, P14, and P21 to identify the gene expression changes in the olfactory epithelia. We also performed RNA-Seq experiment of the olfactory epithelia from Kir2.1 transgenic mice at the same time points to understand the effect of neural activity deprivation on the transcriptome.
|
|
|
Overall design |
For wildtype animal experiment, mouse olfactory epithelia samples from 4 replicates of P0 mice, 3 replicates of P3 mice, 3 replicates of P5 mice, 4 replicates of P7 mice, 3 replicates of P10 mice, 3 replicates of P14 mice, and 3 replicates of P21 mice. For Kir2.1 experiment, 4 replicates of P0 Kir2.1 mice, 3 replicates of P3 Kir2.1 mice, 3 replicates of P5 mice, 4 replicates of P7 Kir2.1 mice, 4 replicates of P10 Kir2.1 mice, 3 replicates of P14 Kir2.1 mice, and 3 replicates of P21 Kir2.1 mice were used.
|
|
|
Contributor(s) |
Wu Y, Ma L, Blanck J, Scott A, Chen SC, Hassan H, Hall K, Perera A, Yu CR |
Citation missing |
Has this study been published? Please login to update or notify GEO. |
|
Submission date |
Mar 24, 2020 |
Last update date |
Aug 29, 2022 |
Contact name |
Congrong Ron Yu |
E-mail(s) |
cry@stowers.org
|
Phone |
816-926-4334
|
Organization name |
Stowers Insitute for Medical Research
|
Lab |
Yu
|
Street address |
1000 E 50th St
|
City |
Kansas City |
State/province |
Missouri |
ZIP/Postal code |
64110-2262 |
Country |
USA |
|
|
Platforms (1) |
GPL9250 |
Illumina Genome Analyzer II (Mus musculus) |
|
Samples (47)
|
|
This SubSeries is part of SuperSeries: |
GSE147463 |
Molecular Control of Circuit Plasticity and the Permanence of Imprinted Odor Memory |
|
Relations |
BioProject |
PRJNA614925 |
SRA |
SRP253854 |
Supplementary file |
Size |
Download |
File type/resource |
GSE147459_RSEM_TPM_table.csv.gz |
3.1 Mb |
(ftp)(http) |
CSV |
GSE147459_star_count.csv.gz |
1.9 Mb |
(ftp)(http) |
CSV |
SRA Run Selector |
Raw data are available in SRA |
Processed data are available on Series record |
|
|
|
|
|