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Sample GSM416760 Query DataSets for GSM416760
Status Public on Aug 25, 2009
Title MCF7
Sample type SRA
 
Source name cell line
Organism Homo sapiens
Characteristics cell line: MCF7
Growth protocol RNA was harvested from exponentially growing cells
Extracted molecule total RNA
Extraction protocol Total RNA extracted using standard Trizol extraction. Total RNA fractionated on 15% polyacrylamide gel and 3' and 5' adaptors sequentially ligated requiring a 3' hydroxyl group and 5' phosphate
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection size fractionation
Instrument model Illumina Genome Analyzer
 
Description none
Data processing Reads containing linker matches were mapped (after removing linkers) to predicted pre-miRNAs (MirBase version 12.0)
 
Submission date Jun 12, 2009
Last update date May 15, 2019
Contact name Christine Mayr
E-mail(s) mayrc@mskcc.org
Organization name Whitehead Institute
Street address 9 Cambridge Center
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
 
Platform ID GPL9052
Series (1)
GSE16579 miRNA expression of human cancer and mouse cell lines
Relations
SRA SRX012262
BioSample SAMN00004415

Data table header descriptions
SEQUENCE
COUNT counts

Data table
SEQUENCE COUNT
TAGCTTATCAGACTGATGTTGATCGTATGCCGTCTT 477463
TAGCTTATCAGACTGATGTTGACTCGTATGCCGTCT 269839
AGCGTGTAGGGATCCAAATCGTATGCCGTCTTCTGC 157418
TAGCTTATCAGACTGATGTTGTCGTATGCCGTCTTC 69190
TTAACGCGGCCGCTCTACAATAGTGATCGTATGCCG 52552
TGAGGTAGTAGATTGTATAGTTTCGTATGCCGTCTT 39092
CAGTCTCTACGGAGACTGTCGTATGCCGTCTTCTGC 29688
TAGCTTATCAGACTGATGTTGACATCGTATGCCGTC 27240
TGAGGTAGTAGGTTGTATAGTTTCGTATGCCGTCTT 27183
AGCAGCATTGTACAGGGCTATGATCGTATGCCGTCT 23213
TGAGGTAGTAGATTGTATTCGTATGCCGTCTTCTGC 21340
TTCAAGTAATCCAGGATAGGCTTCGTATGCCGTCTT 18173
CATTAACGCGGCCGCTCTACAATAGTGATCGTATGC 18172
TAATACTGCCGGGTAATGATGGATCGTATGCCGTCT 17247
GGCATTAACGCGGCCGCTCTACAATAGTGATCGTAT 15257
TAGCTTATCAGACTGATGTTGAATCGTATGCCGTCT 15046
TCTAGCTTATCAGACTGATGTTGATCGTATGCCGTC 13854
TAGCTTATCAGACTGATGTTGATCGTATGCCTTCTT 13229
TAGCTTATCAGACTGATGTTGATCGTATTCCGTCTT 12442
TAACACTGTCTGGTAAAGATGGTCGTATGCCGTCTT 11714

Total number of rows: 776046

Table truncated, full table size 29579 Kbytes.




Supplementary data files not provided
SRA Run SelectorHelp
Processed data included within Sample table
Raw data are available in SRA
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