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Sample GSM4116157 Query DataSets for GSM4116157
Status Public on Feb 13, 2020
Title AN naïve Bulk RNA-seq
Sample type SRA
 
Source name hPSC
Organism Homo sapiens
Characteristics cell type: hPSC
iPSc source: Renal epithelial cells
passage: <10
Extracted molecule total RNA
Extraction protocol Total RNA was isolated using the E.Z.N.A. total RNA kit I.
Library construction was performed using the SMARTer Directional cDNA Library Construction Kit
 
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 3000
 
Data processing Raw reads were trimmed with cutadapt to remove low quality bases
Trimmed reads were aligned to hg38 using STAR_2.5.4b with gencode v27 annotation
Aligned reads were quantified using featureCounts 1.6.3 from the subreads package
Genome_build: hg38
Supplementary_files_format_and_content: gene counts text file
 
Submission date Oct 10, 2019
Last update date Feb 13, 2020
Contact name Bo Zhang
E-mail(s) bzhang29@wustl.edu
Phone 3143624757
Organization name Washington University School of Medicine
Department Developmental Biology
Lab Zhang
Street address 4515 McKinley Research Bldg 03212
City Saint Louis
State/province Missouri
ZIP/Postal code 63110
Country USA
 
Platform ID GPL21290
Series (2)
GSE138688 Derivation of trophoblast stem cells from naïve human pluripotent stem cells [RNA-seq]
GSE138762 Derivation of trophoblast stem cells from naïve human pluripotent stem cells
Relations
BioSample SAMN13008853
SRA SRX6975186

Supplementary data files not provided
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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