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| Status |
Public on Aug 20, 2009 |
| Title |
CD4-HDAC3 |
| Sample type |
SRA |
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| Source name |
CD4+ T cell
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| Organism |
Homo sapiens |
| Characteristics |
cell type: CD4+ T cell
antibody: anti-HDAC3 Ab
sirna: n/a
treatment: n/a
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| Treatment protocol |
Treatment protocol as described in Wang et al., 2009
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| Growth protocol |
Growth protocol as described in Wang et al., 2009
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| Extracted molecule |
genomic DNA |
| Extraction protocol |
Extract protocol as described in Wang et al., 2009
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| Library strategy |
ChIP-Seq |
| Library source |
genomic |
| Library selection |
ChIP |
| Instrument model |
Illumina Genome Analyzer |
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| Description |
CD4 HDAC3
ChIP-Seq, genomic DNA
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| Data processing |
Sequence reads were obtained and mapped to the human (March 2006, hg18) genomes using the Illumina Genome Analyzer Pipeline. More details as described in Wang et al., 2009
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| Submission date |
Apr 18, 2009 |
| Last update date |
May 15, 2019 |
| Contact name |
Chongzhi Zang |
| Organization name |
University of Virginia
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| Street address |
P. O. Box 800717
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| City |
Charlottesville |
| State/province |
VA |
| ZIP/Postal code |
22908 |
| Country |
USA |
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| Platform ID |
GPL9052 |
| Series (1) |
| GSE15735 |
Genome-wide mapping of HATs and HDACs in human CD4+ T cells |
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| Relations |
| SRA |
SRX017705 |
| BioSample |
SAMN00009880 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSM393952_CD4-HDAC3-vstep.txt.gz |
11.8 Mb |
(ftp)(http) |
TXT |
| GSM393952_CD4-HDAC3.bed.gz |
82.2 Mb |
(ftp)(http) |
BED |
| GSM393952_CD4-HDAC3_genes.txt.gz |
18.3 Kb |
(ftp)(http) |
TXT |
| GSM393952_CD4-HDAC3_islands.bed.gz |
89.4 Kb |
(ftp)(http) |
BED |
SRA Run Selector |
| Processed data provided as supplementary file |
| Raw data are available in SRA |
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