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Sample GSM355336 Query DataSets for GSM355336
Status Public on Jun 01, 2011
Title Training58-2
Sample type RNA
Source name Pretreatment sample_Training set
Organism Homo sapiens
Characteristics Pretreatment endoscopic biopsy samples collected from CF-treated metastatic gastric cancer patients
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from tumor-rich area using Trizol, according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
Hybridization protocol Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix G3000 GeneArray Scanner
Description Training set to identify the signature for the intrinsic resistance to CF
This sample uses the same CEL data as GSM355232
Data processing The data were processed with R (v 2.6.1) and BRB-ArrayTools (v 3.6).
Submission date Dec 24, 2008
Last update date Jun 01, 2011
Contact name Jeffrey E Green
Phone 3014355193
Fax 3014968709
Organization name NCI
Street address Rm 4054, 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL571
Series (2)
GSE14209 Dysregulated genes associated with acquired resistance
GSE14210 Expression data from human endoscopic biopsy samples
Alternative to GSM355232

Data table header descriptions

Data table
1007_s_at 11.0818388
1053_at 7.331554349
117_at 6.294473465
121_at 8.172204196
1255_g_at 4.313833833
1294_at 8.819507164
1316_at 5.860713105
1320_at 5.378838806
1405_i_at 10.49314511
1431_at 4.503903497
1438_at 6.139448227
1487_at 8.657025411
1494_f_at 5.942084306
1598_g_at 9.266275809
160020_at 7.950527856
1729_at 9.165284713
177_at 5.849356353
1773_at 5.407014385
179_at 8.13326537
1861_at 7.261173652

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM355336.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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