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Sample GSM355232 Query DataSets for GSM355232
Status Public on Jun 01, 2011
Title Training58
Sample type RNA
Source name Pretreatment sample_Training set
Organism Homo sapiens
Characteristics Pretreatment endoscopic biopsy samples collected from CF-treated metastatic gastric cancer patients
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from tumor-rich area using Trizol, according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
Hybridization protocol Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix G3000 GeneArray Scanner
Description Training set to identify the signature for the intrinsic resistance to CF
This sample uses the same CEL data as GSM355336
Data processing The data were processed with R (v 2.6.1) and BRB-ArrayTools (v 3.6).
Submission date Dec 24, 2008
Last update date Jun 01, 2011
Contact name Jeffrey E Green
Phone 3014355193
Fax 3014968709
Organization name NCI
Street address Rm 4054, 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL571
Series (2)
GSE14208 Clinical response of metastatic gastric cancer patients to cisplatin and fluorouracil (CF) combination chemotherapy
GSE14210 Expression data from human endoscopic biopsy samples
Alternative to GSM355336

Data table header descriptions

Data table
1007_s_at 10.62716443
1053_at 6.634970889
117_at 5.57718395
121_at 7.483750727
1255_g_at 3.874355679
1294_at 8.129007737
1316_at 5.267998694
1320_at 4.913244985
1405_i_at 9.900949183
1431_at 4.141957678
1438_at 5.501438826
1487_at 7.964060727
1494_f_at 5.429634194
1598_g_at 8.50743966
160020_at 7.347782318
1729_at 8.444859877
177_at 5.282462593
1773_at 4.81404871
179_at 7.457362553
1861_at 6.557989183

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM355232.CEL.gz 2.1 Mb (ftp)(http) CEL
Processed data included within Sample table

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