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Sample GSM355235 Query DataSets for GSM355235
Status Public on Jun 01, 2011
Title Training61
Sample type RNA
Source name Pretreatment sample_Training set
Organism Homo sapiens
Characteristics Pretreatment endoscopic biopsy samples collected from CF-treated metastatic gastric cancer patients
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from tumor-rich area using Trizol, according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
Hybridization protocol Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix G3000 GeneArray Scanner
Description Training set to identify the signature for the intrinsic resistance to CF
This sample uses the same CEL data as GSM355337
Data processing The data were processed with R (v 2.6.1) and BRB-ArrayTools (v 3.6).
Submission date Dec 24, 2008
Last update date Jun 01, 2011
Contact name Jeffrey E Green
Phone 3014355193
Fax 3014968709
Organization name NCI
Street address Rm 4054, 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL571
Series (2)
GSE14208 Clinical response of metastatic gastric cancer patients to cisplatin and fluorouracil (CF) combination chemotherapy
GSE14210 Expression data from human endoscopic biopsy samples
Alternative to GSM355337

Data table header descriptions

Data table
1007_s_at 10.82698962
1053_at 7.819662548
117_at 5.728242828
121_at 8.086392228
1255_g_at 3.672775474
1294_at 6.375662027
1316_at 4.994971081
1320_at 4.71950041
1405_i_at 5.275416943
1431_at 3.990797921
1438_at 7.342125925
1487_at 8.67685436
1494_f_at 5.725909922
1598_g_at 8.44555859
160020_at 7.333114953
1729_at 7.798278758
177_at 5.094862565
1773_at 4.749212913
179_at 7.909821151
1861_at 6.381353103

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM355235.CEL.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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