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Sample GSM355337 Query DataSets for GSM355337
Status Public on Jun 01, 2011
Title Training61-2
Sample type RNA
Source name Pretreatment sample_Training set
Organism Homo sapiens
Characteristics Pretreatment endoscopic biopsy samples collected from CF-treated metastatic gastric cancer patients
Extracted molecule total RNA
Extraction protocol Total RNA was extracted from tumor-rich area using Trizol, according to the manufacturer's instructions.
Label biotin
Label protocol Biotinylated cRNA were prepared according to the standard Affymetrix protocol from 1 ug total RNA
Hybridization protocol Following fragmentation, 15 ug of cRNA were hybridized for 16 hr at 45C on GeneChip Human Genome Array. GeneChips were washed and stained in the Affymetrix Fluidics Station 450.
Scan protocol GeneChips were scanned using the Affymetrix G3000 GeneArray Scanner
Description Training set to identify the signature for the intrinsic resistance to CF
This sample uses the same CEL data as GSM355235
Data processing The data were processed with R (v 2.6.1) and BRB-ArrayTools (v 3.6).
Submission date Dec 24, 2008
Last update date Jun 01, 2011
Contact name Jeffrey E Green
Phone 3014355193
Fax 3014968709
Organization name NCI
Street address Rm 4054, 37 Convent Drive
City Bethesda
State/province MD
ZIP/Postal code 20892
Country USA
Platform ID GPL571
Series (2)
GSE14209 Dysregulated genes associated with acquired resistance
GSE14210 Expression data from human endoscopic biopsy samples
Alternative to GSM355235

Data table header descriptions

Data table
1007_s_at 11.34438611
1053_at 8.547905886
117_at 6.498445321
121_at 8.799685186
1255_g_at 4.05891347
1294_at 6.96200507
1316_at 5.879449755
1320_at 5.128388138
1405_i_at 5.719535942
1431_at 4.380776285
1438_at 8.035265441
1487_at 9.293867247
1494_f_at 6.3557567
1598_g_at 9.185410035
160020_at 7.912841984
1729_at 8.707380068
177_at 5.685520876
1773_at 5.293375501
179_at 8.631755472
1861_at 7.055159868

Total number of rows: 22277

Table truncated, full table size 496 Kbytes.

Supplementary file Size Download File type/resource
GSM355337.CEL.gz 2.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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