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| Status |
Public on Dec 27, 2018 |
| Title |
Group4, rep3 |
| Sample type |
SRA |
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| Source name |
Group4
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| Organism |
Homo sapiens |
| Characteristics |
subject status: healthy control
subject group: group4: healthy control
tissue: peripheral blood
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| Extracted molecule |
total RNA |
| Extraction protocol |
The RNA extraction from PBCs were using PAXgene blood RNA kit.
KAPA Stranded RNA-Seq Library Prep Kit(Illumina)
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 4000 |
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| Description |
ctrl03-CHS
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| Data processing |
Solexa pipeline version 1.8（Off-Line Base Caller software, version 1.8） used for basecalling.
Sequenced reads were trimmed for adaptor sequence, and masked for low-complexity or low-quality sequence, then mapped to GRCh37 whole genome using Hisat2 v2.1.0
FPKM (ơFragments Per Kilobase of gene/transcript model per Million mapped fragments) were calculated using Ballgown v2.8.4.
Genome_build: GRCh37
Supplementary_files_format_and_content: Differentially expressed genes between groups.
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| Submission date |
Dec 26, 2018 |
| Last update date |
Dec 27, 2018 |
| Contact name |
Yuchen Jiang |
| E-mail(s) |
197473463@qq.com
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| Organization name |
Third Affiliated Hospital of Sun Yat-sen University
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| Street address |
600 Tianhe Road
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| City |
Guangzhou |
| State/province |
Guangdong |
| ZIP/Postal code |
510630 |
| Country |
China |
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| Platform ID |
GPL20301 |
| Series (1) |
| GSE124389 |
Acne flare-up in treatment process: investigating the difference of gene expression in peripheral blood |
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| Relations |
| BioSample |
SAMN10644958 |
| SRA |
SRX5180656 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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