|
| Status |
Public on Jan 13, 2019 |
| Title |
CR-ZT14-2 |
| Sample type |
SRA |
| |
|
| Source name |
Liver after 30% calorie restricted diet for three months
|
| Organism |
Mus musculus |
| Characteristics |
strain: C57BL/6
tissue: Liver
age: 5month
molecule subtype: Polysome associated RNA
timepoint: 14 hours
|
| Extracted molecule |
polyA RNA |
| Extraction protocol |
Poly A tail selection, Non stranded
|
| |
|
| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 2000 |
| |
|
| Description |
Animals were Calorie restricted
|
| Data processing |
Quality check was done using FastQc
Adapter removal by AfterQc
Readcounts by HTSeq
Differential expression by Deseq2
Genome_build: GRCm38.p5 Release M15
Supplementary_files_format_and_content: Txt file
|
| |
|
| Submission date |
Dec 13, 2018 |
| Last update date |
Jan 14, 2019 |
| Contact name |
Roman Kondratov |
| E-mail(s) |
r..kondratov@csuohio.edu
|
| Phone |
2162629156
|
| Organization name |
CLEVELAND STATE UNIVERSITY
|
| Department |
Biomedical Sciences
|
| Lab |
Roman Kondratov
|
| Street address |
2399 euclid avenue, bges dept, sr289
|
| City |
CLEVELAND |
| State/province |
Ohio |
| ZIP/Postal code |
44115 |
| Country |
USA |
| |
|
| Platform ID |
GPL13112 |
| Series (1) |
| GSE123761 |
Calorie restriction regulates translation to regulate metabolism in mouse liver |
|
| Relations |
| BioSample |
SAMN10587756 |
| SRA |
SRX5128032 |
