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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Mar 11, 2021 |
| Title |
rep1_HepG2_BETi |
| Sample type |
SRA |
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| Source name |
Human hepatoma cells
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| Organism |
Homo sapiens |
| Characteristics |
cell type: HepG2
tissue: Human hepatoma cells
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| Extracted molecule |
total RNA |
| Extraction protocol |
RNA was harvested using Trizol reagent.
RNA libraries were prepared for sequencing using standard Illumina protocols, and Illumina TruSeq RNA Sample Prep Kit was used for library construction.
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| Library strategy |
RNA-Seq |
| Library source |
transcriptomic |
| Library selection |
cDNA |
| Instrument model |
Illumina HiSeq 3000 |
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| Description |
int24hrep1
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| Data processing |
Fastqc was taken to Check the RNA sequencing quality
Reads were mapped to hg19 by RSEM, then TPM values were calculated to characterize gene expression profiles.
Genome_build: hg19
Supplementary_files_format_and_content: tab-delimited text files include TPM values for each Sample
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| Submission date |
Dec 03, 2018 |
| Last update date |
Mar 11, 2021 |
| Contact name |
Mengzhu Xue |
| E-mail(s) |
xuemz@sari.ac.cn
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| Organization name |
Shanghai Advanced Research Institute
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| Street address |
No.100, Haike Road
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| City |
Shanghai |
| ZIP/Postal code |
201210 |
| Country |
China |
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| Platform ID |
GPL21290 |
| Series (1) |
| GSE123250 |
Multi-omics Characterization of WNT Pathway Reactivation to ameliorate BET Inhibitor Resistance in Liver Cancer Cells |
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| Relations |
| BioSample |
SAMN10516952 |
| SRA |
SRX5088368 |
| Supplementary data files not provided |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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