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Sample GSM335338 Query DataSets for GSM335338
Status Public on Apr 28, 2009
Title EZH2 RNAi, replicate 2
Sample type RNA
 
Channel 1
Source name SKBr3 cells, EZH2 RNAi
Organism Homo sapiens
Characteristics cell line: SKBr3
Extracted molecule total RNA
Extraction protocol According to the manufacturer's protocol.
Label Cy5
Label protocol According to the manufacturer's protocol.
 
Channel 2
Source name SKBr3 cells, EZH2 control siRNA
Organism Homo sapiens
Characteristics cell line: SKBr3
Extracted molecule total RNA
Extraction protocol According to the manufacturer's protocol.
Label Cy3
Label protocol According to the manufacturer's protocol.
 
 
Hybridization protocol According to the manufacturer's protocol.
Scan protocol Scanned on Agilent Technologies Scanner G2505B.
Images were quantified using Agilent Feature Extraction Software.
Description EZH2 RNAi vs. EZH2 control siRNA
Replicate 2 of 2
Data processing LOWESS normalized, background subtracted VALUE data obtained from log2 of processed Red signal/processed Green signal. Agilent software was used.
 
Submission date Oct 20, 2008
Last update date May 26, 2010
Contact name Christopher Maher
E-mail(s) chrmaher@med.umich.edu
Phone 734-764-3336
Organization name Michigan Center for Translational Pathology
Street address 1500 E. Medical Center Drive
City Ann Arbor
State/province MI
ZIP/Postal code 48105
Country USA
 
Platform ID GPL4133
Series (1)
GSE13286 miR101 overexpression vs. EZH2 RNAi

Data table header descriptions
ID_REF
VALUE normalized log2 ratio (Cy5/Cy3) representing test/reference

Data table
ID_REF VALUE
8240 -0.189498269
32704 0
16371 0
11038 0
8728 0.025733416
44734 0
9248 0.01488044
4710 0
6821 0.20958873
5423 -0.148940895
39901 0.117816738
20609 -0.237695593
25560 -0.004909608
12346 -0.169093756
40914 0.241656156
35998 -0.219409161
17876 -0.195872633
2205 0.148531242
6664 -0.476344231
23169 0.176365235

Total number of rows: 43376

Table truncated, full table size 678 Kbytes.




Supplementary file Size Download File type/resource
GSM335338.txt.gz 14.2 Mb (ftp)(http) TXT
Processed data included within Sample table

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