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Sample GSM3317659 Query DataSets for GSM3317659
Status Public on Dec 04, 2018
Title 3h Replicate 6
Sample type SRA
Source name 3h, HPAF-II xenograft - mouse pancreas
Organism Homo sapiens
Characteristics host: mouse
rin: 8.4
timepoint: 3h
cell type: HPAF-II
treatment: ETC-159 (PORCN inhbitor)
Treatment protocol Treatment with ETC-159 bid
Growth protocol HPAF-II cells injected into the mouse pancreas. Tumors were allowed to develop for 28 days before start of treatment
Extracted molecule polyA RNA
Extraction protocol RNAeasy kit (Qiagen)
Illumina TruSeq Stranded polyA enrichment
Library strategy RNA-Seq
Library source transcriptomic
Library selection cDNA
Instrument model Illumina HiSeq 3000
Description Human graft / mouse host
Data processing adaptor trimming using Cutadapt
filtering using Xenome
alignment using STAR - hg38 Ensembl 79
quantification using STAR - hg38 Ensembl 79
Genome_build: hg38 / Ensembl 79
Supplementary_files_format_and_content: RSEM quantification of human reads
Submission date Aug 02, 2018
Last update date Dec 04, 2018
Organization name Cardiff University
Street address Museum Avenue
City Cardiff
ZIP/Postal code CF10 3AX
Country United Kingdom
Platform ID GPL21290
Series (1)
GSE118041 Transcriptional response to PORCN inhibition using an orthotopic model of RNF43 mutant pancreatic adenocarcinoma (HPAF-II)
SRA SRX3875358
BioSample SAMN08848841

Supplementary file Size Download File type/resource
GSM3317659_nph_m61-3h.genes.results.txt.gz 1.4 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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