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Sample GSM306498 Query DataSets for GSM306498
Status Public on Jul 07, 2009
Title Bt_Ctrl_K10
Sample type RNA
 
Source name Male beef cattle, UNTREATED CONTROL
Organism Bos taurus
Characteristics Anterior limb muscle (biceps branchii)
Extracted molecule total RNA
Extraction protocol Extracted according to QiAgen RNeasy MiniKit protocol for tissues samples
Label Cyanine 3
Label protocol Amplified and labeled according to Agilent One-Color Microarray-Based Gene Expression Analysis protocol
 
Hybridization protocol Hybridized according to Agilent One-Color Microarray-Based Gene Expression Analysis protocol
Scan protocol Array was scanned according to standard Agilent protocol at a resolution of 5 microns modifying default setting to scan the slide twice at two different sensitivity settings (XDRHi 100% and XDRLo 10%)
Description Anterior limb muscle collected from male beef cattle, submerged in RNALater and stored at -20°C until extraction.
Data processing Data processed with FeatureExtraction v9.5 and normalized using R2.6.1 statistical software
 
Submission date Jul 21, 2008
Last update date Jul 07, 2009
Contact name Serena Ferraresso
E-mail(s) serena.ferraresso@unipd.it
Phone +39 049 8272506
Organization name University of Padova
Department Dept of Comparative Biomedicine and Food Science
Street address Viale dell'Università
City Legnaro (PD)
State/province Padova
ZIP/Postal code 35020
Country Italy
 
Platform ID GPL7053
Series (1)
GSE12179 Expression profiling of skeletal muscle in beef cattle treated with steroidal growth promoters

Data table header descriptions
ID_REF
gMedianSignal Raw median signal of feature
gBGMedianSignal Median local background signal
gIsFound Boolean used to flag found features.
gProcessedSignal The signal left after all the FE processing steps have been completed (Multiplicatively Detrended BackgroundSubtracted Signal)
VALUE Normalized intensities (null corresponds to "missing" spot)

Data table
ID_REF gMedianSignal gBGMedianSignal gIsFound gProcessedSignal VALUE
1 22385.5 47 1 2.01E+04 25210.21237
2 51 47.5 0 2.52E+00 null
3 51.5 46 0 2.55E+00 null
4 50 47 0 2.58E+00 null
5 53.5 49 0 2.60E+00 null
6 48 48 0 2.63E+00 null
7 47 47 0 2.65E+00 null
8 50.5 47 0 2.67E+00 null
9 51 47 0 2.69E+00 null
10 49 47 0 2.71E+00 null
11 49 47 0 2.72E+00 null
12 382.5 48 1 3.32E+02 357.5718012
13 52.5 47 0 2.75E+00 null
14 53 48 0 2.76E+00 null
15 297.5 47 1 2.61E+02 272.487756
16 49.5 47 0 2.79E+00 null
17 50 46 0 2.80E+00 null
18 108 47 1 5.54E+01 57.53480101
19 53 47 0 3.27E+00 null
20 85 47 1 3.57E+01 37.91662389

Total number of rows: 44407

Table truncated, full table size 1512 Kbytes.




Supplementary data files not provided
Processed data included within Sample table

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