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Sample GSM2828783 Query DataSets for GSM2828783
Status Public on Oct 24, 2017
Title ChIP-seq from K562 (ENCLB202XBO)
Sample type SRA
 
Source name Homo sapiens K562 immortalized cell line stably expressing C-terminal eGFP-BACH1 fusion protein
Organism Homo sapiens
Characteristics antibody: eGFP-BACH1
line: K562
biomaterial_type: immortalized cell line
description: K562 cell line stably expressing a C-terminal LAP-tag containing eGFP, fused to BACH1
biosample encode accession: ENCBS746PBJ (SAMN07791187)
Sex: female
lab: Kevin White, UChicago
passage number: 5
health state: chronic myelogenous leukemia (CML)
age: 53 year
dev stage: adult
link: ENCBS746PBJ at ENCODE; https://www.encodeproject.org/ENCBS746PBJ/
link: derived from ENCODE donor ENCDO000AAD; https://www.encodeproject.org/ENCDO000AAD/
link: general protocol; https://www.encodeproject.org/documents/49f21171-553c-4d01-a5e1-444d695d2fab/@@download/attachment/White-Lab-K562-BAC.pdf
link: ENCODE dbxrefs Cellosaurus CVCL_AW14; http://web.expasy.org/cellosaurus/CVCL_AW14
Extracted molecule genomic DNA
Extraction protocol not provided
 
Library strategy ChIP-Seq
Library source genomic
Library selection ChIP
Instrument model Illumina HiSeq 2500
 
Description https://www.encodeproject.org/experiments/ENCSR740NPG/
***************
biological replicate number: 1
technical replicate number: 1
description: eGFP-BACH1 ChIP-seq on human K562
experiment encode accession: ENCSR740NPG
assay title: ChIP-seq
assembly: GRCh38, hg19
possible controls: ENCSR969FPP
encode release date: 2016-06-13
lab: Kevin White, UChicago
library encode accession: ENCLB202XBO
size range: 200-800
instrument models: Illumina HiSeq 2500,Illumina HiSeq 2000
Data processing See GSM*_README.txt supplementary file linked below
 
Submission date Oct 23, 2017
Last update date May 15, 2019
Contact name ENCODE DCC
E-mail(s) encode-help@lists.stanford.edu
Organization name ENCODE DCC
Street address 300 Pasteur Dr
City Stanford
State/province CA
ZIP/Postal code 94305-5120
Country USA
 
Platform ID GPL16791
Series (1)
GSE105939 ChIP-seq from K562 (ENCSR740NPG)
Relations
BioSample SAMN07791187
SRA SRX3322874
Named Annotation GSM2828783_ENCFF782OOT_fold_change_over_control_hg19.bigWig
Named Annotation GSM2828783_ENCFF837ASO_signal_p-value_GRCh38.bigWig
Named Annotation GSM2828783_ENCFF701KHH_fold_change_over_control_GRCh38.bigWig
Named Annotation GSM2828783_ENCFF077KEO_signal_p-value_hg19.bigWig

Supplementary file Size Download File type/resource
GSM2828783_ENCFF077KEO_signal_p-value_hg19.bigWig 713.5 Mb (ftp)(http) BIGWIG
GSM2828783_ENCFF135DVR_peaks_GRCh38.bigBed 12.1 Mb (ftp)(http) BIGBED
GSM2828783_ENCFF469YOH_peaks_hg19.bed.gz 6.7 Mb (ftp)(http) BED
GSM2828783_ENCFF701KHH_fold_change_over_control_GRCh38.bigWig 652.6 Mb (ftp)(http) BIGWIG
GSM2828783_ENCFF782OOT_fold_change_over_control_hg19.bigWig 644.5 Mb (ftp)(http) BIGWIG
GSM2828783_ENCFF795UBE_peaks_GRCh38.bed.gz 6.6 Mb (ftp)(http) BED
GSM2828783_ENCFF837ASO_signal_p-value_GRCh38.bigWig 660.7 Mb (ftp)(http) BIGWIG
GSM2828783_ENCFF906RNM_peaks_hg19.bigBed 12.1 Mb (ftp)(http) BIGBED
GSM2828783_ENCLB202XBO_README.txt.gz 1.9 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record
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