|
Status |
Public on May 12, 2017 |
Title |
whole_blood_case_108 |
Sample type |
RNA |
|
|
Source name |
whole_blood_case
|
Organism |
Homo sapiens |
Characteristics |
subject group: CASE; major depressive disorder (MDD) patient anxiety: no gender: F age: 67.1 tissue: whole blood batch: 2
|
Extracted molecule |
total RNA |
Extraction protocol |
RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
|
Label |
biotin
|
Label protocol |
standard Affymetrix protocol
|
|
|
Hybridization protocol |
standard Affymetrix protocol
|
Scan protocol |
Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
|
Description |
SAMPLE 162
|
Data processing |
The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
|
|
|
Submission date |
May 11, 2017 |
Last update date |
Jan 23, 2018 |
Contact name |
Gwenael G.R. Leday |
E-mail(s) |
gwenael.leday@mrc-bsu.cam.ac.uk
|
Organization name |
University of Cambridge
|
Department |
School of Clinical Medicine
|
Lab |
MRC Biostatistics Unit
|
Street address |
Forvie Site, Robinson Way
|
City |
Cambridge |
ZIP/Postal code |
CB2 0SR |
Country |
United Kingdom |
|
|
Platform ID |
GPL570 |
Series (1) |
GSE98793 |
Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls |
|