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Sample GSM2612257 Query DataSets for GSM2612257
Status Public on May 12, 2017
Title whole_blood_case_108
Sample type RNA
 
Source name whole_blood_case
Organism Homo sapiens
Characteristics subject group: CASE; major depressive disorder (MDD) patient
anxiety: no
gender: F
age: 67.1
tissue: whole blood
batch: 2
Extracted molecule total RNA
Extraction protocol RNA was isolated from all samples using the standard PAXgene protocol on the Qiagen Biorobot 8000.
Label biotin
Label protocol standard Affymetrix protocol
 
Hybridization protocol standard Affymetrix protocol
Scan protocol Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA). Arrays were scanned on a GeneChip Scanner 3000 and fluorescence intensity for each feature of the array was obtained by using GeneChip® Operating Software (Affymetrix, Santa Clara, CA, USA).
Description SAMPLE 162
Data processing The data were read and RMA-normalized using the Bioconductor package affy (default parameters).
 
Submission date May 11, 2017
Last update date Jan 23, 2018
Contact name Gwenael G.R. Leday
E-mail(s) gwenael.leday@mrc-bsu.cam.ac.uk
Organization name University of Cambridge
Department School of Clinical Medicine
Lab MRC Biostatistics Unit
Street address Forvie Site, Robinson Way
City Cambridge
ZIP/Postal code CB2 0SR
Country United Kingdom
 
Platform ID GPL570
Series (1)
GSE98793 Gene expression analysis in whole blood samples obtained from donors diagnosed with MDD compared to healthy controls

Data table header descriptions
ID_REF
VALUE log2 GC-RMA signal

Data table
ID_REF VALUE
220399_at 5.221981081
1557055_s_at 7.941196796
227201_at 5.552438128
231942_at 3.73423382
235497_at 4.825567115
236624_at 4.428142429
237011_at 3.575131477
1555979_at 5.758785196
1555980_a_at 4.56850457
1560477_a_at 5.784355746
1559139_at 3.145971829
202115_s_at 7.279652796
1555650_at 4.366878178
229792_at 5.461321908
224125_at 6.165684256
224501_at 4.914379631
227347_x_at 4.7381944
205483_s_at 7.916970937
212283_at 4.763062969
212285_s_at 6.686311559

Total number of rows: 54675

Table truncated, full table size 1212 Kbytes.




Supplementary file Size Download File type/resource
GSM2612257_GP2842_66_SS490484_HG-U133_Plus_2_HCHP-228062_.CEL.gz 5.0 Mb (ftp)(http) CEL
Processed data included within Sample table

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